Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0325 ATGGGAAAGCGTAATTCTCAACGTAAAAATGCTGCAATGTTGGATAGTGACGATGATAGTAGTGTGAGTTCGTCATCAAGTTCGCGAACTGATCACGTGTCCGTGTCAGGGAAAGAAGAAGTGCACTTCGATCAAGATGCTCTGCTCGATCAAGCTCTCGATGCTTTAGATGAGAAAAGGGGTACCACGAGGGAGAGAGCGTTGTCATTGATCGTTAGGGCATTCAGTAGCAACATGCAGCATCAGTTTGTGGATAAGAAATTTGCTACTTTATTACATCAGTGTCTTGCTTCAATAAAAAAGGGATCCAAAAAGGCATCTGCAAAGGAGATAGCTTTGGCATCACATGCCATTGgTTTGTTGACCCTGACTGTTGGATGTGGTGATAATGCATGTGAAATATTTAAGGAATCATTTCATCCTCTAGATGAATTTCTTACATCTAAATCAGATTTGACAAAAGTTCCCTCAttgcTGGAATGCTTGGCTATAATCACTTTTGTTGGTGGGAATGATCAAGAGGAAACAGAGAGATCTATGGACATACTGTGGCAAGTGATTCATCCCAGATTAGGTTCCAATGTAGTTGCAGTCAAACCTTCTGCTCCATTAATAACTGCTGTGGTATCTGCTTGGTCCTTTCTCCTATCTACCACAAGCGAGTTGAAgctaaattctaaaaattggCAAAATTCAATATCTTATTTATCAAGTCTTCTAGACAAGGAAGACCGGCCTGTGCGTATTGCTGCTGGCAAAGCACTGGCTGTAATTTTTGAGATTGGAattatagagaaattttctgGTGATTCTAAGGGTGCACGTGATATGACTCAAGAGGAGATTAATCGGCAGGAAAGTTACACCCATTTACAAGGATTGAAAGGGAAGGTCATCAATCAAGTCAAAAACCTTTCTGTTGAGGCTGGTGGAAAAGGCTGTGCTAAGAAAGATCTTAATAGTCAGAGGAACTTGTTTCGAGATATCGTGGAATTTTTTGAGTATGGTTACTCTTCTgaaatttcaatgaaaattgGTGGTGATTCACTGCAGATATCTTCATGGTCCCAAATGATAcagTTGAACTTTCTCAAGCACTTTTTGGGGGGAGGGTTCATCAAGCATATGCAGGAAAACGAGTTCCTTCAAGATGTATTCAATTTCACACCAAAGAGAAGATATCTTGATAACAATGAACGTCGGATGTCTAGTGGTGAGAAGAGAATGTTTAAGTCTCCAAATTCAGTTCAGAACAAGGCTAGGACCCAGTTACTTAATAAGCAACGGTTGTTATCCGAGGGCAGAAACTTGGGTCACTACGCAGCCAATATGGTTGATGACGAGGCGTTTTGA 1353 0.3932 MGKRNSQRKNAAMLDSDDDSSVSSSSSSRTDHVSVSGKEEVHFDQDALLDQALDALDEKRGTTRERALSLIVRAFSSNMQHQFVDKKFATLLHQCLASIKKGSKKASAKEIALASHAIGLLTLTVGCGDNACEIFKESFHPLDEFLTSKSDLTKVPSLLECLAIITFVGGNDQEETERSMDILWQVIHPRLGSNVVAVKPSAPLITAVVSAWSFLLSTTSELKLNSKNWQNSISYLSSLLDKEDRPVRIAAGKALAVIFEIGIIEKFSGDSKGARDMTQEEINRQESYTHLQGLKGKVINQVKNLSVEAGGKGCAKKDLNSQRNLFRDIVEFFEYGYSSEISMKIGGDSLQISSWSQMIQLNFLKHFLGGGFIKHMQENEFLQDVFNFTPKRRYLDNNERRMSSGEKRMFKSPNSVQNKARTQLLNKQRLLSEGRNLGHYAANMVDDEAF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0325 450 Pfam Interferon-related protein conserved region 379 429 IPR006921 -
Ssu5g0325 450 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2-LIKE ISOFORM X1 1 442 - -
Ssu5g0325 450 Pfam Interferon-related developmental regulator (IFRD) 22 334 IPR007701 -
Ssu5g0325 450 MobiDBLite consensus disorder prediction 16 32 - -
Ssu5g0325 450 Gene3D - 23 271 IPR011989 -
Ssu5g0325 450 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g0325 450 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 442 IPR039777 -
Ssu5g0325 450 SUPERFAMILY ARM repeat 47 263 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0325 Ssu-Chr5 6914608 6921664 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0325 5 6914608 6921664 Ssu1g3705 1 93294724 93298854 PCT