Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0322 ATGGGAACGGAGAGTTACACGTACATGGGACGCAGTTTGAGCGAACTCAGCATGGACGACgattcctcctcctcctccgctTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGACGCTTCCTCATCGCCTGCGCCGCCGAAAATTCTGACGACTTGATCCGTCAACTCGTCGCCGATCTCCACTCCGCCTCCGTCGACGATCAGAAACAGGCCGCCATGGAAATCCGGTTGCTCGCGAAGAACAAGCCGGAGAACCGCGTCAAAATCGCGAAAGCCGGCGCGATCAAACCGCTGATTTCTCTCATTTCGTCGCCGGACCTTCAGCTCCAGGAATACGGCGTCACCGCGATTCTGAACCTCTCGCTCTGCGACGAGAACAAGGAGGTGATAGCTTCCTCCGGCGCGATTAGGCCGCTGGTCCGGTCTCTGAGCAAGGGAACCGTGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTCTCGCAGGTGGAGGGGAACAAGGCGGCGATCGGGCGGTCCGGCGCGATTCCGCCGCTGGTGAGCCTCCTGGGGAGCGGCGGGTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGATGAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGGCGGTGCCGGAGGCGAGGGCGGCGCTGGTGGACGAAGGAGGCGTGCCGGTGCTCGTGGAGATCGTGGAGGTCGGGACGCAGAGGCAGAAGGAAATCGCGGTGGTTATTCTGTCGCAGCTGTGCGAGGACAGCGTGGCGTATCGCACCATGGTGGCTCGCGAAGGTGCCATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTGCGGCAACCAAGATCCGGCAACGCCGCTACTCGTACGTCAGAAGTGGTGGCGTAA 1059 0.6034 MGTESYTYMGRSLSELSMDDDSSSSSAFSDCNSDRSGEFATASSQTRRFLIACAAENSDDLIRQLVADLHSASVDDQKQAAMEIRLLAKNKPENRVKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIASSGAIRPLVRSLSKGTVTAKENAACALLRLSQVEGNKAAIGRSGAIPPLVSLLGSGGFRGKKDASTALYSLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVPEARAALVDEGGVPVLVEIVEVGTQRQKEIAVVILSQLCEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNAATRTSEVVA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0322 352 Gene3D - 201 339 IPR011989 -
Ssu5g0322 352 SUPERFAMILY ARM repeat 58 333 IPR016024 -
Ssu5g0322 352 MobiDBLite consensus disorder prediction 16 38 - -
Ssu5g0322 352 Pfam Armadillo/beta-catenin-like repeat 133 171 IPR000225 GO:0005515
Ssu5g0322 352 Pfam Armadillo/beta-catenin-like repeat 175 212 IPR000225 GO:0005515
Ssu5g0322 352 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515
Ssu5g0322 352 Gene3D - 29 199 IPR011989 -
Ssu5g0322 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 345 - -
Ssu5g0322 352 SMART arm_5 297 337 IPR000225 GO:0005515
Ssu5g0322 352 SMART arm_5 173 213 IPR000225 GO:0005515
Ssu5g0322 352 SMART arm_5 255 295 IPR000225 GO:0005515
Ssu5g0322 352 SMART arm_5 132 172 IPR000225 GO:0005515
Ssu5g0322 352 SMART arm_5 214 254 IPR000225 GO:0005515
Ssu5g0322 352 SMART arm_5 91 131 IPR000225 GO:0005515
Ssu5g0322 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515
Ssu5g0322 352 PANTHER U BOX DOMAIN-CONTAINING 5 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0322 Ssu-Chr5 6818073 6820135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0322 43 344 U-box Gene Family AT2G23140 49.007 1.82e-86 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0322 5 6818073 6820135 Ssu5g0322 5 6818073 6820135 ECH
Ssu5g0322 5 6818073 6820135 Ssu1g3708 1 93388840 93392468 PCT