Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0319 ATGAAGAAGAACACAGACATCAAGAGTTATTCTTATTCCCCTGCCACTCCGAGGTCACCTCCAATGGATCCCCGAATTTGGAGCAAATTGCCACCTGAAACCCTCGAGTACATACTCTCCTTCCTTCCTCTCAAGACCTTCTTGAATCTCAGATCCACTTGCAAAGGTTTCTGGTCTCTCATATTCTCTCCCTCCTTCATTTCCAAgcactcttctctctcttcttcttcttcttcctcacccttctcttcctttctcttacTCTCCCACCCTCAATTCCACCGCCACTTCCCTCTCTATGACTGCACACTTGGCACCTGGCGCAACATCTCTCTTTCACTCTCTGATTCACCCCACTCGTTTCCTTCCTTCACCACTCTTGTCTCCTCTGGTGGCCTCTTTTGCCTAACTGATTCCACATCATGCTCCTTGCTCGTGTGCAACCTTCTAGCCAAGTCTTCTAGAAAGATTCAATACCCAAGTTTCTCTCTTCACTTGGAACATCTTACTTTTGTAACCACCCCAACTGGGTATACCATATTTGTTCTATGTTCTCAGTCTGCTTCAAACTGTGCCTTTGTGTATGATTCAAACGTGCAAACTTGGAAGCGATTTCACGGTTTTGGTCCTGTTCTCGGTGACAATCACCACCAACAAGGTGTTTTCTACAATGGGGGTTTGTATTTTGCGACCCCAGAACCGTTTTCGGTGGTGATCTTTGATTTGGAGAGTGGAAGGTGGGAGAGACCCGTTGGGGAGTTACCGAGTCAGCTCACTTTTGTTCGATTGGTAAGTGATGGGGAGGGTAAATTGTATTTGGTTGGAGGGGTTGGGAACAATGGAATCTCGAGGAGCATCAAGTTGTGGGAATTGGGTGGAGATGGGAATTGGGTGGAAGTACAGAGTTTGCCTGATCTTATGTGCAGAAAGTTTGTGTCGGTGTGTTACCATAATTATGAgcatgtttattgtttttggCATGAAGGGATGATCTGCATTTGCTGCTACACGTGGCCAGAGATCTTGTATTACTTGGTTTCTAGGAGGACATGGCATTGGCTTCCCAGGTGCCCCTCTTTGCCTCTGAAATGTAGCTGTGGTTTCAAGTGGTTTTCTTTTGTTCCAAAGCTGTATGCTTCAGTCTGA 1146 0.4337 MKKNTDIKSYSYSPATPRSPPMDPRIWSKLPPETLEYILSFLPLKTFLNLRSTCKGFWSLIFSPSFISKHSSLSSSSSSSPFSSFLLLSHPQFHRHFPLYDCTLGTWRNISLSLSDSPHSFPSFTTLVSSGGLFCLTDSTSCSLLVCNLLAKSSRKIQYPSFSLHLEHLTFVTTPTGYTIFVLCSQSASNCAFVYDSNVQTWKRFHGFGPVLGDNHHQQGVFYNGGLYFATPEPFSVVIFDLESGRWERPVGELPSQLTFVRLVSDGEGKLYLVGGVGNNGISRSIKLWELGGDGNWVEVQSLPDLMCRKFVSVCYHNYEHVYCFWHEGMICICCYTWPEILYYLVSRRTWHWLPRCPSLPLKCSCGFKWFSFVPKLYASV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0319 381 Pfam F-box domain 27 57 IPR001810 GO:0005515
Ssu5g0319 381 Gene3D - 89 369 IPR015915 GO:0005515
Ssu5g0319 381 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0319 381 PANTHER F-BOX/KELCH-REPEAT PROTEIN 26 379 - -
Ssu5g0319 381 Gene3D - 25 69 - -
Ssu5g0319 381 SUPERFAMILY Galactose oxidase, central domain 80 359 IPR011043 -
Ssu5g0319 381 SMART fbox_2 30 70 IPR001810 GO:0005515
Ssu5g0319 381 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 26 379 - -
Ssu5g0319 381 ProSiteProfiles F-box domain profile. 24 70 IPR001810 GO:0005515
Ssu5g0319 381 SUPERFAMILY F-box domain 17 70 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0319 Ssu-Chr5 6722333 6723478 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0319 5 6722333 6723478 Ssu1g3713 1 93438828 93442178 PCT