Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0317 ATGGCTTCAGTGGAGCAGCCTCCGAAGAAGCGAAAGCTCTACGAGCCTTTACCAGAATCGCCGCCGTCTTCGCCTCCGTCATCGCCGGCGGCGGCATCCGAAGCCACCCCTCCCTCTCCGCAAACCCTACCCCCGCCTTCAACTCCACCGCTGTCTCAGGAGGAGATTGTCGCGAAGCGGCGGAACAGGGATGAAATTCGAAGTGTGTACGAAGGTTACAAGCGGATTAAGCGTTGCTTGCTTCAGAAAGACGCTCCTCCCTCCGTATCTGACCTTGATCAGAGTTATCTCGCTCTCATCACTTCTTCCAGAGGTTGTATTAGTGTACAAAGAATTGTGGCCGATCTTATTCCTCGATATGCAAGCCACTGTCCAACAGCTTTGGAAGCTGCAGCTAAAGTTGTTATTAATATGCACAACTTGAGTGTGGCATTGATCAGTAGAGGAGAGGATTCCAGTGGTATTGCATTTGAAACTGCTAGAGCCTGTATTTGCGGCCTAGCTGATATTTGCTGCATTGCTTCATTGGTGGCACCAACATCAGCTGTAATTAGAGGAATTTGCTCAGCAGTTTTTCAGAATGTGCTCACCTTTTTTATAGCCTTATTTGAAGGAAAGGATGTCTTACAGATGGTTGACAAGAATTTCCTGAATATGCAAGATAGCTCTAAGGTCTTTTCTGAGTTGAAACAAAAGGTTTTAGATGAAGATGAATCTTCATTGACTAAACTGTCCAAGTTTCGTGCATTATGTCTACTTTGGATATTCTTCTCTTGTCCAAAAGATTTGCTTGCAGCTTGTTTGGAGCTCCTAGGCTCTGCAACAAAAGAGGGAACTAATGACGAAGGACAGCATTTTATGAGCCTGGTGACTAGCACGTTTGGTGATGATGAAGCAGTTCACCTTTTGGATAGAGCAATTGGGGGAACTAAATCATGTACTGATTCTACTGGGTCATCCATCAGAGACAATGAGGCCGGTGACAAAATTATGACTGAAGACAATCATGTTTCTGGTGGTGATTCATCTGTTGGCAAGAGCTGCTTGCTTATACGGGTTCTTGACAAGGACCCCCTACTGCGGACATGGATGTTGTGTAGATGTAAGAAGTTACTTGACTTGCTCTCCAATGCGTCACTGAAAATTACGTCAGTACTGCAGGGAATTCTTGGAATGTTTGCTCAAACAGATTTAGAAGACTGTCAAGTAGATAGTGATGAAGATAAATCTGATTCTTCAATTTACACGAATAGGAACTACATGGTTCCTAGGATCTCTGAGGAACATGAAAGTATTGGTGAATCATCTGGAAAAGGCAGCAGTTTGAGAGTTCATGTGGGTTCTTCTAATGATGGTTTTACTGATAAGGTTTCTGATAAATATGTGATGGCTCTTAGCTCTGCAGTTTCTCTTGACAATGTTCCTGCATTAAAAGTGGGTTCGCATTATGATAATGGAGTCTCAAAGCCCATGAGCATTGTGGTGGGGGAGGAAGCGAATATGCCCAATGTTAGATGTTCCACACCTAGGGACTCAGTAAGCCATCAAATATTCTCACCTGCAGTTAGAACACCAGTAGACTTTAGGAGTAATTCATTTGAAGGTAGAAATGATTTCCTGAATGTAGAGAAAAATCAAGtcttaaatatgaatttcaattcACCTCCGCTGAGATCCTCCAGTGGATCTGTTAGTAATTCTTTGGCATCTCCTAATCATTTTATGTCACCAACAGCTTCAACAAAAAGTCAAATTGTCTGGTGCTGTGATGGGGATCCTGCAGCCATGGATATTGTCTCTGCTTCTAAGCAGCTATGGATAGGTTATGTAGGTCCTGATGTGCCCGAAAGTCATATTAGGTTTCACTTAGAAAGATTTGGTCCTATtgaacaatttattttcttcccaGTAAAAGGATTTGCCTTGGTTGAGTACAGAAGGATCATTGACGCGATAAAAACTCGACACTGTTTACCTGGATGTATTCCTTGCCGTGTAAAATTCATGGATATAGGACTTGGAACTAGGGGTGCAATGAATGGTGTTGCAGTTGGCTCTAGTTCTCATATTTATGTTGGAAATATTCCCAGTCAATGGGCCAAGGATGAGATCGTGCATGAATCAAGGAAAGTGATCCACAAGGGTCCTCTCACAGTTATTGATCTTAGCTGTGAGTTTGCGTTTCTTATGGAATTTGAAACTCCTGAAGAAGCTGCCACTGTCATGTTGCATCTGAGACAATTCCGAAGAGAAAGAAGTAACTATAACCAACATTTTGTTCCAGGAACAGTTAATGTTGGAATTGGGCATACTTATATGGATGGTGCAAGGCATGTACCTGCCCCTCCCCCTCCCCATCTTGACCTTAAAGTCAACAACCCTGCTGTATCACCTCATGCTCGAACTCTACCAGGGAGCCCTGCTGATAGCAGTCGAACAAGGATGTCTCACTTGTCCACCTTACTTGCTTCATTGCGCacaaagtataatattaatcaaaaccTAGGTCTCAATGATAATTATATGACTGGAAATAATTGTCCTTCCATGCGTGAGGAAGATATGGTGCCATCCAGCACTCTGTGCATAACTATTCCACGTAGCTCTTTGTTCCTCACAGATGATGAGTTAATGGCCATTTGCAATCTTGCCATCGGAAACTCTGGATCCATTGTGCAGTTGACACAAGCAAACATGCAGATGGGATGTAGTTGGTTTGTTGAATGTAGTAATGTTGATGGTGCAATTTCTGTTTTAAAGAATCTCCGTGGTTGTCCAGGATTGTTCTTCCAGATAGAATTCAGCAGCAAACCTGGAAATCAGAATGCTGTACCATTTGCAGTTAAACCAGAGAACAATTCTATGGAGCTTGTATCCCCCAGAATAAATTCTGAAAATCATACTAGTGGAATACAGGGTGCACCTCTGCCTCAGTCAAACTGGCACTTTCCTGGTTCTAGGGAGATGTCAGAGGTTGGAGCAAGGAAACCTGATGCTTATGATAATTTGTCACAGGATCCTCATCAAGGAGGTAATATTCCACATTCGCTCTCTGGAGCACATGGACCTTCCATTCCACCACCGCAACAAATTCAGTCATCTCCTTTTGTTCGCCCTGTTTATGTTCCTCCAAATGGTCCATGGGATTGTCGGggaataaataatcatttaccTGTAAGCCAATTCAAGACAGGACTAATGCCAAATAATTTTCATGGTAATGCTGTTGTAAGTCCTTTTATTCCTGCTTCAGTAACTCCACTTGCTCAGATACAAGGAACTCCAATGCATCCCTATAACCAGCAGATGCCTCCATCAATTATACCACCACCTTTATCATCCTTGCCACCCCCTCAGCCTGAAATGCCACCTCCACTTCCTCCTTCTCCACCACCTTTACCCCTGGTTCAGCCACCCTTGGTTCCGCCACTTCCTAGTTCTCCTCCtccccctcctcctcctccactGCCTGTCCAAGAATCAGTCAATATGGAATGTTCAGGGCAGTCTTTGCAGTATCAATGGCAGGGGAATCTCTGTAAAAGTGGGGTTAACTACTGTACAATTTATGCATGCAAAGCAGATTCAAATATTTGCCGATATTCAAATGCCATACCTGAGCCTGCTGAGTGGCCCACAAAATTAGACATGACAAAACGCACAGACCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAAGGGAAGTGTGCCGTTTGATCCCATCATCCACTAGTGACCACAGAAGGTTTCAGGATTTCATATCATACTTAAAGCAGAGGGATTGTGCTGGAGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTCATTCTCCCCTACTCTCTTGAAACTTGCTCCTTGCTTTCTATTGCACCTGATCCGTCAGATTGCCTCATTGCTTTGGTTCTTCCCAAAGAAACAAACTTTGAGTGGATATGA 3963 0.4252 MASVEQPPKKRKLYEPLPESPPSSPPSSPAAASEATPPSPQTLPPPSTPPLSQEEIVAKRRNRDEIRSVYEGYKRIKRCLLQKDAPPSVSDLDQSYLALITSSRGCISVQRIVADLIPRYASHCPTALEAAAKVVINMHNLSVALISRGEDSSGIAFETARACICGLADICCIASLVAPTSAVIRGICSAVFQNVLTFFIALFEGKDVLQMVDKNFLNMQDSSKVFSELKQKVLDEDESSLTKLSKFRALCLLWIFFSCPKDLLAACLELLGSATKEGTNDEGQHFMSLVTSTFGDDEAVHLLDRAIGGTKSCTDSTGSSIRDNEAGDKIMTEDNHVSGGDSSVGKSCLLIRVLDKDPLLRTWMLCRCKKLLDLLSNASLKITSVLQGILGMFAQTDLEDCQVDSDEDKSDSSIYTNRNYMVPRISEEHESIGESSGKGSSLRVHVGSSNDGFTDKVSDKYVMALSSAVSLDNVPALKVGSHYDNGVSKPMSIVVGEEANMPNVRCSTPRDSVSHQIFSPAVRTPVDFRSNSFEGRNDFLNVEKNQVLNMNFNSPPLRSSSGSVSNSLASPNHFMSPTASTKSQIVWCCDGDPAAMDIVSASKQLWIGYVGPDVPESHIRFHLERFGPIEQFIFFPVKGFALVEYRRIIDAIKTRHCLPGCIPCRVKFMDIGLGTRGAMNGVAVGSSSHIYVGNIPSQWAKDEIVHESRKVIHKGPLTVIDLSCEFAFLMEFETPEEAATVMLHLRQFRRERSNYNQHFVPGTVNVGIGHTYMDGARHVPAPPPPHLDLKVNNPAVSPHARTLPGSPADSSRTRMSHLSTLLASLRTKYNINQNLGLNDNYMTGNNCPSMREEDMVPSSTLCITIPRSSLFLTDDELMAICNLAIGNSGSIVQLTQANMQMGCSWFVECSNVDGAISVLKNLRGCPGLFFQIEFSSKPGNQNAVPFAVKPENNSMELVSPRINSENHTSGIQGAPLPQSNWHFPGSREMSEVGARKPDAYDNLSQDPHQGGNIPHSLSGAHGPSIPPPQQIQSSPFVRPVYVPPNGPWDCRGINNHLPVSQFKTGLMPNNFHGNAVVSPFIPASVTPLAQIQGTPMHPYNQQMPPSIIPPPLSSLPPPQPEMPPPLPPSPPPLPLVQPPLVPPLPSSPPPPPPPPLPVQESVNMECSGQSLQYQWQGNLCKSGVNYCTIYACKADSNICRYSNAIPEPAEWPTKLDMTKRTDLRHVKSTFAATPSHRREVCRLIPSSTSDHRRFQDFISYLKQRDCAGVIKIPASKSIWARLLFILPYSLETCSLLSIAPDPSDCLIALVLPKETNFEWI 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 1093 1158 - -
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 1005 1038 - -
Ssu5g0317 1320 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1319 - -
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 18 51 - -
Ssu5g0317 1320 SUPERFAMILY RNA-binding domain, RBD 592 662 IPR035979 GO:0003676
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 1 53 - -
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 969 993 - -
Ssu5g0317 1320 Pfam SPOC domain 1169 1311 IPR012921 -
Ssu5g0317 1320 MobiDBLite consensus disorder prediction 1102 1158 - -
Ssu5g0317 1320 Gene3D - 594 674 IPR012677 -
Ssu5g0317 1320 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1319 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0317 5 6687538 6702798 Ssu5g0317 5 6687538 6702798 ECH