Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0316 ATGGAACCTGTAGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCCGAATGTTTGCCAGTGAGGAGCATGATTTCACCCCTCAATTTCCACTTCTGCTTGGGGAAGATGGTGATGATGAATTGAACATTGTGACACAACCCACATTTTGTGCTGCTCCTGAAGCTGGTGAAAATGAGCGTATGTTTTATTCTTTAGATGCTCACAACTCAAATTCGCAGTATTTTTCACAAGAAAGTAGTTATAGTAGCAATTGTAGTGGTGACACTGTCTCCATTGCCAATCCGGGTTGCgcaaactattattttagttacCCTGATCATGTGCTACCAAATAATGCATGTGTATATTCCATGGATGAGAAAATTTGTTCCTCTTTTGTCCCATCGCTCACTGACATTGTAACGGAAGAGAGTGTCAAGTTGTATGAAGATGTGGCAAGTGACAGATTGGAGAACTCTGAATGCAATCAAATGGAACCTATTGTTTTTCCCACCAAGCAGTTGCAGCTGAAAAGGAAGCTTGATGTGCCTGCTGAAGACAAAATCAACAACAGATCCGAGAATCACAAGAAAAACCCCCGTGTTTTAAAAGATGGGCAAGGATGCATGAAAAACGCATGGTCCAAGAAGAACAAGAAACATACCAGCAACGGGGAAGAGGTAGAAGAGACTAATGCAGGATCAGACGGACAAAGCTCTAGTAGTAACATGTCAGAAGATGATAACGCTTCTAAGGAAAATAGTGGAGGAGCTACTTCAGACTCTAAATCTGTTCTCAACTCAAATGGGAAAACAAGAGCAAGTAGGGGCTCAGCAACAGATCCCCAGAGTCTGTATGCGAGGaaaagaagagagagaataaatgaGCGACTAAGAATCCTACAGAATCTTGTCCCAAACGGAACAAAGGTCGATATAAGTACAATGCTTGAAGAGGCAGTCAACTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTACGCTCCGCTTGCTTATAATGGGCTCGACATTGGGCTCAATCTCAACCTGAAGAACTCCCTACCACTCTGA 1077 0.4178 MEPVGAFPDGEWDCFRRMFASEEHDFTPQFPLLLGEDGDDELNIVTQPTFCAAPEAGENERMFYSLDAHNSNSQYFSQESSYSSNCSGDTVSIANPGCANYYFSYPDHVLPNNACVYSMDEKICSSFVPSLTDIVTEESVKLYEDVASDRLENSECNQMEPIVFPTKQLQLKRKLDVPAEDKINNRSENHKKNPRVLKDGQGCMKNAWSKKNKKHTSNGEEVEETNAGSDGQSSSSNMSEDDNASKENSGGATSDSKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNLKNSLPL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0316 358 MobiDBLite consensus disorder prediction 179 284 - -
Ssu5g0316 358 Pfam Helix-loop-helix DNA-binding domain 282 322 IPR011598 GO:0046983
Ssu5g0316 358 MobiDBLite consensus disorder prediction 179 198 - -
Ssu5g0316 358 Gene3D - 271 329 IPR036638 GO:0046983
Ssu5g0316 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 356 - -
Ssu5g0316 358 CDD bHLH_AtIND_like 273 335 - -
Ssu5g0316 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 336 IPR036638 GO:0046983
Ssu5g0316 358 SMART finulus 278 327 IPR011598 GO:0046983
Ssu5g0316 358 MobiDBLite consensus disorder prediction 222 276 - -
Ssu5g0316 358 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 356 - -
Ssu5g0316 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0316 Ssu-Chr5 6674757 6676694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0316 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.753 5.22e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0316 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0316 5 6674757 6676694 Ssu5g0316 5 6674757 6676694 ECH