Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0315 ATGGCTTTGGAGGCTCTCAACTCACCCACAACAACCGCACCATCTTTCCCCTTTGACGACCCAACCGTTCCATGGGCGAAACGCAAGCGTTCAAAGCGTTCACGCGACCACCCTTCGGAAGACGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCGGCGCCGCCACCGTCAAACGCCGTAGCACCACTCCTCCGCCCGAGGCACCGCCACAACCGACCCCGGATCCTTCTATCAAGCTCAGTTACAAATGCTCCGTTTGCGACAAGGCCTTCCCCTCTTACCAAGCGCTCGGCGGACACAAGGCCAGTCACCGGAAACTCGCCGCCGGCGCGGAAGACCAACCCGCCTCCTCCGCCGCCACCGCCACCAGCTCCGCCAACACCAACGGCGGAGGAGGTAGGGTCCACGAGTGCTCCATCTGCCACAAATCCTTCCCCACCGGACAGGCCTTGGGCGGACACAAACGTTGCCACTACGAAGGTAACGGTAACGGTAACGGTAACGGAAATAGTAACAGCGTTGTCACCGCCTCGGAAGGTGTGGGGTCCACCCACACCGTTAGTCACGGCCAGCGTGACTTCGATCTCAATATCCCGGCTTTTCCGGAATTTTCTACCAAGGTCGGAGAAGACGAGGTTGAAAGCCCTCACCCGGTGATGAAGAAGCCGCGTCTCTTCGTGATTCCCAAGATCGAGATCCCCCAGTTTCAATAA 723 0.5961 MALEALNSPTTTAPSFPFDDPTVPWAKRKRSKRSRDHPSEDEYLALCLIMLARGGGAATVKRRSTTPPPEAPPQPTPDPSIKLSYKCSVCDKAFPSYQALGGHKASHRKLAAGAEDQPASSAATATSSANTNGGGGRVHECSICHKSFPTGQALGGHKRCHYEGNGNGNGNGNSNSVVTASEGVGSTHTVSHGQRDFDLNIPAFPEFSTKVGEDEVESPHPVMKKPRLFVIPKIEIPQFQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0315 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 231 IPR044653 GO:0003700
Ssu5g0315 240 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Ssu5g0315 240 MobiDBLite consensus disorder prediction 108 136 - -
Ssu5g0315 240 SUPERFAMILY beta-beta-alpha zinc fingers 85 161 IPR036236 -
Ssu5g0315 240 SMART c2h2final6 85 107 IPR013087 -
Ssu5g0315 240 SMART c2h2final6 139 161 IPR013087 -
Ssu5g0315 240 MobiDBLite consensus disorder prediction 58 80 - -
Ssu5g0315 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Ssu5g0315 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Ssu5g0315 240 MobiDBLite consensus disorder prediction 119 135 - -
Ssu5g0315 240 Pfam C2H2-type zinc finger 138 162 - -
Ssu5g0315 240 Pfam C2H2-type zinc finger 85 109 - -
Ssu5g0315 240 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Ssu5g0315 240 MobiDBLite consensus disorder prediction 1 17 - -
Ssu5g0315 240 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g0315 240 Gene3D Classic Zinc Finger 83 161 - -
Ssu5g0315 240 PANTHER ZINC FINGER PROTEIN ZAT10 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0315 Ssu-Chr5 6653467 6654189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0315 1 236 C2H2 Transcription Factor Family AT1G27730 50.593 5.47e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g0315 zf-C2H2_6 5e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0315 5 6653467 6654189 Ssu5g0315 5 6653467 6654189 ECH
Ssu5g0315 5 6653467 6654189 Ssu1g3718 1 93486159 93486779 PCT