Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0310 ATGACGAGGTTTACTCTGCtcttctttatcattttctttcaaggaaaaaaaattggtctTATCTTACTGAATTGGGGTTTGGCTTATCCTACCACTGTGTTTGAATGTTCTCAGGATGAAACAATGCATTCAGGGGTCGATGTGGAAGCCTTCCAGGCTGCCCTAAATAGAGATATAGGAGGAGATGTGTCTACTTCTCAGTTTTCTGGTTCAGATGCAGTTTTGTCTCAAGGAAGCAATAATACATCAAGTCAATCTTTACCACAGTGGCCTACTTCTAACCATGACAGCCGAACTGACTCTCAAAATCAAGAACCTAAAACTGCACAACAGCAAGAGCAACCTTCATCTGAGATGGATCTAAAGCAACATGCGTCTCTTGTGGAACAACTACAGCATGTTGCATCTCAGGACGTAAATAATCCTCATTTGTCACAGAAACAATCTCAAGATGAATATCACCAAGCACCAGCTGTACAAGTTTCCCTCCAAAATTCTCAAGCTATCGGAATTCAGAATTGTGGAAAAGATCCAGTCGTGAATAGTGAGGTAGTAAAGAATCATAACCCCAGCAGTGAATCTCAGTATGCAAAGTTGCAGCAGATGAGTAATCAACAGGCTACAGTCTCTGAGCAGCCAAGTAGCCAAGGAAATCGTAGTAAACAAGTACCATTTGGCCTGTTGCTACCCATCTTGATTCCTCAACTTGCCAAAGACAGAGCCATGCAACTTCAAACCTTATTTGCTAAATTGAAGAAAGATGAAATACCGAAAGACAGTTTTGTGCGGCTAATGAAAGGTATTGTAGGGGACCAGATGCTTAGATTAGCATTAGCAAAGGTGCAAATGCAACCACAGACAAGGCCCAATCAAGCATCTGCTGGGCAGCAGCACCCTGTAAGGATGCCAACTGTTAGTTCAGGTGCAAGGCAATTGAATGATCCCCATGCTTTAGCACAGATGCATCAGAGAAGTATGAATGCTGCTGTTGACCAATCTCGCATGACTTCTTCAGCTGGCCCAACTATGGAGAACAATGCTAGAAAATCTCAGGAATTGGATGTTAAAATAGAATCTCAAGGATTGCAACCAAGTCAATTGCCATCTTCCAGTTCCAACACAGTTggtcaagaaacagaaagatCATCAGTTCACATACAAGGGCTTAATAAGCAGCAGCAACAACATCTACATTTCCCATCAGCATATGGGAATAGTGGTGGTAACTATAACCCTTTTTCTGGGACAACCAGTAGTTCCACTTCATCTATCAAACCTCAACCACATGATTCACATATGAGTCAAATTCCGCATCAAAGTATTGGTTCAAATCACTTAGGTGGGTCAACACATGGTTTGAATGTAATTGGTATGCCAAAACATGAACAGCAGAATTCTTTCAATGATCCCAAGAGACTGCCAGGTGGATCTGTGTCTCCTGCTGTAAACAATACGGCATCTCAACAAACTTCAAATGCTTGGCAACCATCAacaaacaaagaacaaaatctGGGCTTAACGTCATCTGTTACTTATGTCAAAAAGGAACCTAGTGACTTGTCTACTGAGCAGCAAAATAGGCATAATTTGTCTAAATTGCATGGGTATTCTTCTGTCAATTCTGCTCAGATTGAACAGGGTGGTGCTAGTCAAGGAACTGCAAAGGATGAGTTTTCAAGAGGTCTTCCAGCATCCACAAGCATGCCACCTACAACATCTACTGGCTTGCTGCCACACAGTTCGGCTTCCCCTTCTGTAGTGACTCAACTAGACCCTACTGTCTTGCTAAGCTCTCAGATCCCATCAAATGCTTCTGGAATTGTTGCAAGGACACCTCTTAAAAAGCCTGCTGTTACCCAAAAGAAACCGCTTGAAGCACTTGGTTCCTCACCTCCTCCTCCAAGtaaaaaacaaaaaacttctgGCGGATCTGTAGAACAAAGCATTGAACAACTTAATGACGTCACTGCTGTTAGTGGAGTTGACCTCAGGgAAGAGGAAGAGCATTTATTTTCAGGGCCCAAAGAGGATAGTCGAGTGTCAGAAGCTTCTCGAAAGGCTGtgcaagaagaagaggaaaggcTGATTTTGCAGAAAGCtccattgcaaaaaaaattaattgacatcATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAAATGCTTGTCACTGTGTGTGGAGGAAAGGATGCGTGAACTGATAAGTAACCTGATTAGAATATCAAAACAGAGGGTTGATTTTGAGAAAACAAGACATGGGACTGTTGTCACTTCAGATGTTCGGCAGCAAATCATGACAATAAATAGGAAAGTAAGGGAAGAGTGGGAGAAAAAACAGGTAGAATCAGAGAAGCTTCGGAAACTAAATGATgttGAGAGCAATACTGGAGTTGATGGTGACAAGGAGAAGGACGAGGGCCGTGTTAAATCAACAAAGGTGAACAAGGAAGAGGATGACAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAGGCAGAAACGTGAAGGGGGGATGGACATGTCATCTGGTTCTCAACCAGCTAAAGATGTGAACCGCAAATCTTCATCATCTGGAAGAAATACAAAGGATAACCAAGAAGGGGAGAAAAAGGGTCCAACTGCTTTCCTCACAACTTCAGTGGCTGCTAGAAAACTTGGGAGGAATCATGCCATTGCACCTCAAACTAGGGTAGCTCGAAGCATCTCTGTGAGGGATGTAATTGCAGTCCTGGAGAGGGAACCCCAGATGTCTAAATCTCCACTCATACATCGCTTGTATGAGAGAATTCATTCTGATGCCCCAGTTGAACAAGGTTAA 2889 0.4133 MTRFTLLFFIIFFQGKKIGLILLNWGLAYPTTVFECSQDETMHSGVDVEAFQAALNRDIGGDVSTSQFSGSDAVLSQGSNNTSSQSLPQWPTSNHDSRTDSQNQEPKTAQQQEQPSSEMDLKQHASLVEQLQHVASQDVNNPHLSQKQSQDEYHQAPAVQVSLQNSQAIGIQNCGKDPVVNSEVVKNHNPSSESQYAKLQQMSNQQATVSEQPSSQGNRSKQVPFGLLLPILIPQLAKDRAMQLQTLFAKLKKDEIPKDSFVRLMKGIVGDQMLRLALAKVQMQPQTRPNQASAGQQHPVRMPTVSSGARQLNDPHALAQMHQRSMNAAVDQSRMTSSAGPTMENNARKSQELDVKIESQGLQPSQLPSSSSNTVGQETERSSVHIQGLNKQQQQHLHFPSAYGNSGGNYNPFSGTTSSSTSSIKPQPHDSHMSQIPHQSIGSNHLGGSTHGLNVIGMPKHEQQNSFNDPKRLPGGSVSPAVNNTASQQTSNAWQPSTNKEQNLGLTSSVTYVKKEPSDLSTEQQNRHNLSKLHGYSSVNSAQIEQGGASQGTAKDEFSRGLPASTSMPPTTSTGLLPHSSASPSVVTQLDPTVLLSSQIPSNASGIVARTPLKKPAVTQKKPLEALGSSPPPPSKKQKTSGGSVEQSIEQLNDVTAVSGVDLREEEEHLFSGPKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVEKCLSLCVEERMRELISNLIRISKQRVDFEKTRHGTVVTSDVRQQIMTINRKVREEWEKKQVESEKLRKLNDVESNTGVDGDKEKDEGRVKSTKVNKEEDDKMRTNAANVAARAAYGGDDMLSKWQLMAEQARQKREGGMDMSSGSQPAKDVNRKSSSSGRNTKDNQEGEKKGPTAFLTTSVAARKLGRNHAIAPQTRVARSISVRDVIAVLEREPQMSKSPLIHRLYERIHSDAPVEQG 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0310 962 MobiDBLite consensus disorder prediction 459 505 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 666 686 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 356 450 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 786 828 - -
Ssu5g0310 962 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 64 384 IPR045144 GO:0005669|GO:0006352
Ssu5g0310 962 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 375 954 IPR045144 GO:0005669|GO:0006352
Ssu5g0310 962 MobiDBLite consensus disorder prediction 286 310 - -
Ssu5g0310 962 PANTHER IP01149P-RELATED 64 384 - -
Ssu5g0310 962 PANTHER IP01149P-RELATED 375 954 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 607 647 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 564 585 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 184 221 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 633 647 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 325 348 - -
Ssu5g0310 962 CDD TAF4 647 948 IPR007900 GO:0005669|GO:0006352
Ssu5g0310 962 ProSiteProfiles RST domain profile. 216 287 IPR022003 -
Ssu5g0310 962 Gene3D Histone, subunit A 697 742 IPR009072 GO:0046982
Ssu5g0310 962 MobiDBLite consensus disorder prediction 868 885 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 853 903 - -
Ssu5g0310 962 Pfam RCD1-SRO-TAF4 (RST) plant domain 219 282 IPR022003 -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 322 505 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 68 122 - -
Ssu5g0310 962 MobiDBLite consensus disorder prediction 544 585 - -
Ssu5g0310 962 Pfam Transcription initiation factor TFIID component TAF4 family 652 948 IPR007900 GO:0005669|GO:0006352
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0310 Ssu-Chr5 6540123 6549293 Wgd