Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0306 ATGGCGTCGAGTTTTGACCGGTGGGAAAAGGATCCTTTCTTTAACGCTGCCGAAGAAGTTCAGGAATCTGCAGACAGAATGGAATCTACATATAGGACATGGATACACGCAACAAAAGATGGGTCTAGCATGTGGAACTCTGATGAATTGTGCAGAGATCTACATACTGCACTTGGCACTGCCAAATGGCAGTTAGAGGAATTTGAACGGGCAGTGAGGTCAAGTTATAGCAAAAGCTCAAGTGAGGAAGCGAGAAATAGGCACCGTGATTTTATCACTGCCATTGAGGATAAGATAATGAAAGTTGAGCATTCGTTAAGTGAATCAGTCGTTCCGGGAAGCAAGGCATCTCTGCCTTGGTTGCACTTAGATGAAGGAGAACAGAATGagcttgctttgtttctttcagGAATGCCAGCAGCTGAAAGTAATGATCCCACTTGGTCTAACTTAAGGGACATTGAAGATCCAcaattaaatgataaagttTTGGCCAGTAAATTGTTTGAAGGATTTTCATGTTTCGTCTGGATGGGGTGA 540 0.4093 MASSFDRWEKDPFFNAAEEVQESADRMESTYRTWIHATKDGSSMWNSDELCRDLHTALGTAKWQLEEFERAVRSSYSKSSSEEARNRHRDFITAIEDKIMKVEHSLSESVVPGSKASLPWLHLDEGEQNELALFLSGMPAAESNDPTWSNLRDIEDPQLNDKVLASKLFEGFSCFVWMG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0306 179 PANTHER EXPRESSED PROTEIN 1 157 - -
Ssu5g0306 179 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
Ssu5g0306 179 Pfam Syntaxin 6, N-terminal 11 102 IPR015260 GO:0016020|GO:0048193
Ssu5g0306 179 Gene3D - 9 110 - -
Ssu5g0306 179 PANTHER OS05G0443700 PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0306 Ssu-Chr5 6490986 6491886 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0306 5 6490986 6491886 Ssu5g0306 5 6490986 6491886 ECH
Ssu5g0306 5 6490986 6491886 Ssu1g3725 1 93613109 93614689 PCT