Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0296 ATGGCCGACACAGAGAACCACACGCGCCCCCAACGCGAGGCGAAGAAGAGAGCCGCAGCTGCAATATGCGAACTGCACGGCGCCGCCAAGAAGAAGCGCGTCGTTTTGGGAGACCTCACCAACGTGTCCAACGCCGTTGCCGCACCGGAAAAGCCCGTTTCGCAGGTTCACAAACAGAAGAAGCAAAAAGTCGAAAAACCGACGGCGACGGTGGTAGCCACGCCGGAGAAGCCGAACGAGAGACACGACCCGCAGCTGTGTGGGCCATACGTTTCGGATATATACGAATATCTTCGCGGGATGGAGGTGGAACCTAGCAAGAGACCGTTGGcggattatgttcagaaggttCAGAGGGACGTTAATGCTAACATGAGAGGTGTTCTGGTAGATTGGTTAGTGGAGGTTGCTGAAGAATATAAACTTGTTTCGGACACgctttatttttgtgttgcaTACATTGACAGGTTTCTGTCGTTGAATGCATTGTCAAGACAGAGACTGCAATTGCTTGGGGTTGCTGCGATGCTTATTGCTTCGAAATACGAAGAGATTAAGCCGCCTGAGGTGGAGGACTTTTGTTACATTACGGATAACACATACTCTAAGGAAGAGgttgtgAACATGGAAGCTGATATATTGAAGGCTTTGAAGTTTGAATTGGGTGGTCCTACAGTGAAGACATTCTTAAGGAGATTCTCTAGAGTTGGTCAAGAGGGTGTTGATACTTCTGATCTTCAGTTTGAGTTCCTTAGCTGCTACCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTCTTGCCATCTTTGGTGGCTGCATCTGTTGTATTCCTGGCCAGATTTATGTTAAGCACAAAGACACATCCTTGGAATTTGGCGCTCCATCAACTCACTAGATATAAACCTGCTGATTTGAAGGAATGTGTTCTAAACATACATGACTTGTACCTCAGTAGGAGAGGGGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGCGTGGCAACAACACCGTCTCCTCCTGAgatacctttttctttttttgaatttgaggGGGCAGATGCTTAG 1089 0.4454 MADTENHTRPQREAKKRAAAAICELHGAAKKKRVVLGDLTNVSNAVAAPEKPVSQVHKQKKQKVEKPTATVVATPEKPNERHDPQLCGPYVSDIYEYLRGMEVEPSKRPLADYVQKVQRDVNANMRGVLVDWLVEVAEEYKLVSDTLYFCVAYIDRFLSLNALSRQRLQLLGVAAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEADILKALKFELGGPTVKTFLRRFSRVGQEGVDTSDLQFEFLSCYLAELSLLDYNCVKFLPSLVAASVVFLARFMLSTKTHPWNLALHQLTRYKPADLKECVLNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPFSFFEFEGADA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0296 362 SUPERFAMILY Cyclin-like 224 349 IPR036915 -
Ssu5g0296 362 Pfam Cyclin, N-terminal domain 93 221 IPR006671 -
Ssu5g0296 362 SMART Cyclin_C_2 224 347 IPR004367 -
Ssu5g0296 362 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Ssu5g0296 362 Gene3D - 109 222 - -
Ssu5g0296 362 SMART cyclin_7 228 316 IPR013763 -
Ssu5g0296 362 SMART cyclin_7 131 215 IPR013763 -
Ssu5g0296 362 SUPERFAMILY Cyclin-like 82 221 IPR036915 -
Ssu5g0296 362 CDD CYCLIN 125 214 IPR013763 -
Ssu5g0296 362 PIRSF Cyclin_A_B_D_E 2 351 IPR039361 -
Ssu5g0296 362 CDD CYCLIN 224 315 IPR013763 -
Ssu5g0296 362 PANTHER CYCLINS 20 358 IPR039361 -
Ssu5g0296 362 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Ssu5g0296 362 Gene3D - 93 343 - -
Ssu5g0296 362 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 20 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0296 Ssu-Chr5 6355342 6358187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0296 1 356 Core Cell Cycle Gene Families AT1G47230 59.290 3.90e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0296 K06627 - gmx:100801988 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0296 5 6355342 6358187 Ssu5g0296 5 6355342 6358187 ECH
Ssu5g0296 5 6355342 6358187 Ssu1g3736 1 93751269 93754010 PCT