Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0292 ATGGCATCGGCAAGCAGGGAAATGGATCGGGTCAAGGGCCCATGGAGCCCGGAAGAGGACGAGGCGCTGCAGAGGCTGGTCCAGGCTCACGGGCCCAGAAACTGGTCGCTGATAAGCAAGTCCATTCCGGGCCGATCCGGGAAATCGTGCCGTTTACGCTGGTGTAACCAGCTGTCGCCGGAGGTGGAGCACCGGCCGTTCTCGCCGGAGGAGGACGAGGCCATCGTGAGGGCGCACATGAGGTTCGGCAACAAGTGGGCCACCATAGCTCGCTTACTTAACGGCCGCACCGATAACGCCGTTAAGAATCACTGGAACTCCACTCTCAAAAGAAAATGCTCCGCCGTTAGTTCTGATGTGAGCGATCGTCAACCTCTTAAAAGATCCGCCAGTGTCGGCGCGGGCCGCTTAAACCCCAGCAGCCCGTCAGGGTCCGATTTGAGCGATCCGGGCCTGCCCGCTATGTCGACGCCTTCGGGGTCGGCCCATTGCAGGCCCAACCTGGTGGAAACTGCGTCTTCGGCCTCCGATCCAGCCACGTCGCTGAGTTTGTCCCTTCCCGGGTTCGGGTCCGGGCCTAACCCGATAGCGATGGCGCGGCTGGTGTCGCCGCCGCCACCGGTGGCGACGGTGGACGAGCGCGGGAAGCAATTGTTCAACGCGGAGTTTTTGAGGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCGGGGATTGAGCAGAACGGGTTGCGAATGCAGACCGAAGCGATTGGGAACGCAGTGGTGAAGCGCATGGGAATTAGCAACATCgagtga 807 0.5998 MASASREMDRVKGPWSPEEDEALQRLVQAHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDEAIVRAHMRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSSDVSDRQPLKRSASVGAGRLNPSSPSGSDLSDPGLPAMSTPSGSAHCRPNLVETASSASDPATSLSLSLPGFGSGPNPIAMARLVSPPPPVATVDERGKQLFNAEFLRVMQEMIRKEVRSYMSGIEQNGLRMQTEAIGNAVVKRMGISNIE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0292 268 Gene3D - 65 131 - -
Ssu5g0292 268 SMART sant 11 60 IPR001005 -
Ssu5g0292 268 SMART sant 63 111 IPR001005 -
Ssu5g0292 268 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Ssu5g0292 268 MobiDBLite consensus disorder prediction 134 166 - -
Ssu5g0292 268 Gene3D - 11 63 - -
Ssu5g0292 268 CDD SANT 14 56 IPR001005 -
Ssu5g0292 268 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Ssu5g0292 268 MobiDBLite consensus disorder prediction 112 166 - -
Ssu5g0292 268 Pfam Myb-like DNA-binding domain 15 73 - -
Ssu5g0292 268 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Ssu5g0292 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Ssu5g0292 268 CDD SANT 66 109 IPR001005 -
Ssu5g0292 268 PANTHER MYB PROTEIN-RELATED 8 239 - -
Ssu5g0292 268 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 239 - -
Ssu5g0292 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0292 Ssu-Chr5 6223459 6224265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0292 6 244 MYB Transcription Factor Family AT4G37260 52.837 3.52e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g0292 Myb_DNA-bind_6 7.1e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0292 5 6223459 6224265 Ssu5g0292 5 6223459 6224265 ECH
Ssu5g0292 5 6223459 6224265 Ssu1g3750 1 94060894 94061715 PCT