Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0290 atgggaGGTTGGGCTATCGCGGTGCATGGTGGCGCTGGTGTCGACCCTAATCTCCCACTCGAGCGCCAGGAAGAAGCGAAACAACTCCTCACGCGCTGTCTCAATCTCGGCATCTCTGCTCTGCGTTCTAATCTTCCCGCCATCGATGTCGTCGAACTTGtgGTGAGGGAATTGGAAACAGATCCGCTGTTCAATTCGGGCCGTGGATCTGCCCTGACAGAAAAAGGAACGGTGGAGATGGAGGCTAGCATCATGGATGGCCCCAAACGGCGATGCGGCGCCGTTTCGGGCCTTACCACCGTTAAGAACCCGATCTCGCTGGCGCGGTTAGTCATGGACAAATCCCCACATTCGTACCTCGCTTTCTCCGGCGCTGAAGAATTCGCCAGGCAACAGGTTCAGTGTGGAGGTTATGACAACGAGTACTTTATCACACCTGACAATGTTGGCATGCTCAAGCTGGCAAAGGAAGCCAACACAATCCTGTTTGATTACCGGATCCCAACATCGGGGTACGAGACATGCGGATCAGGTGTGGAGAGTCCACTGCAAATGAATGGGCTCCCGATAAGCGTGTACGCGCCGGAAACCGTTGGGTGCGTGGTGGTGGACCGCGAAGGAAGGTGCGCGGCTGCTACGTCCACGGGGGGGCTCATGAACAAAATGATTGGTCGAATCGGTGACTCGCCACTCATAGGCGCCGGGACCTACGCGTGCGACGTGTGTGGGGTATCGTGCACGGGCGAGGGCGAGGCCATCATACGTGGCACCCTGGCGCGTGAGGTGGCAGCGGTCATGGAATACAAAGGGTTGGGCCTCCAGCAGGCCGTGGATTTTGTCATCAAGCACCGTCTCGATGAAGGCAAGGCCGGGCTCATAGCCGTGTCCAACACTGGCGAAGTGGCTTATGGGTTCAACTGTAATGGCATGTTCAGGGGCTGCGCCACCGAGGATGGGTTCATGGAGGTGGGAATCTGGGAGTAG 984 0.5711 MGGWAIAVHGGAGVDPNLPLERQEEAKQLLTRCLNLGISALRSNLPAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFSGAEEFARQQVQCGGYDNEYFITPDNVGMLKLAKEANTILFDYRIPTSGYETCGSGVESPLQMNGLPISVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACDVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQQAVDFVIKHRLDEGKAGLIAVSNTGEVAYGFNCNGMFRGCATEDGFMEVGIWE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0290 327 Gene3D (Glycosyl)asparaginase 197 327 - -
Ssu5g0290 327 CDD Asparaginase_2 5 319 - -
Ssu5g0290 327 PANTHER PEPTIDASE T2, ASPARAGINASE 2, NUCLEOPHILE AMINOHYDROLASE-RELATED 1 327 - -
Ssu5g0290 327 Pfam Asparaginase 4 326 IPR000246 GO:0016787
Ssu5g0290 327 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 324 IPR029055 -
Ssu5g0290 327 PANTHER L-ASPARAGINASE 1 327 IPR000246 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0290 Ssu-Chr5 6171666 6174043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0290 6 287 Miscellaneous Gene Families AT4G00590 27.961 2.21e-16 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0290 5 6171666 6174043 Ssu5g0290 5 6171666 6174043 ECH
Ssu5g0290 5 6171666 6174043 Ssu1g3752 1 94138265 94140472 PCT