Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0288 ATGGCACATCATCACCCAAAACCCCTCCTAGACACCCTGTACTGCTTAGAAGACCACATTCATTGGGAGGAAGAACAAGCAGAAGAAGATGAGTACAGTACCACAACCACAAAATCCTCCCATGTGGTCTTGCTAGAACACGACCTCTTCTGGGACCACGAGGAACTATCTTCTCTTCTCACCAAAGAACACCACAATGAACTCTCTAACTGTCTCCAAAACAATCCTGGTTTGGCCTTGTCTCGCGGAGAAGCCGTGGAGTGGCTTCTCAAAGTGAATGCCCGTTATTCCTTTTCTACTCTCACCGCAGTTCTCTCTGTTAACTACCTCGATAGGTTCCTCTTCAGCTTCAGATTTCAGAACGAGAAGCCTTGGCTCACACAGCTAGCTGCAGTGGCTTGCCTCTCCCTCGCTGCCAAAGTTGAAGAGACCCACGTGCCCCTTTATGTGGACCTTCAATTGGAGGAGAGTAGGTACTTGTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACGCTTGGATGGAAGATGAATCCAGTAACACCTCTCTCGTTTCTTGATTATATCACAAGGAAACTTGGGTTAAAGGGTTACCTCTGCTGGGAGTTCTTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTTGCAGATTCCAGATTTATGGGTTATATTCCTTCTGTGTTGGCAACCGCTACGATGATGCGCGTGGTCAATATTGTGGAGCCTCGTCTAGGAGTGGAATACCAAGATCAGCTCTTGGGTATTCTTGGAATCGACAAGGAGAAGGTGGAAGAATGCTACAAGCTTATGTTGGAGGTTGTGTCAGGGTACGATGAGGAGGGAAAACGATCCAAGTTGAAGAAGAAACGCAAGTTTGAGTCGATTCCTTGTAGCCCAAATGGCGTTATGGATGGGTCGTTTAGCTGTGATAGTTCGGATGACTCTTGGGAGTTAGGTGCATCTGTTCCATCCTCCAAGAAGACTAGGACTCAAGATCAGCTTCTATTGAACCATTCAAACTCGGATTTTCTCAGCATTCCTCGCTAG 1059 0.4674 MAHHHPKPLLDTLYCLEDHIHWEEEQAEEDEYSTTTTKSSHVVLLEHDLFWDHEELSSLLTKEHHNELSNCLQNNPGLALSRGEAVEWLLKVNARYSFSTLTAVLSVNYLDRFLFSFRFQNEKPWLTQLAAVACLSLAAKVEETHVPLYVDLQLEESRYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGYLCWEFFRRCETVLLSVFADSRFMGYIPSVLATATMMRVVNIVEPRLGVEYQDQLLGILGIDKEKVEECYKLMLEVVSGYDEEGKRSKLKKKRKFESIPCSPNGVMDGSFSCDSSDDSWELGASVPSSKKTRTQDQLLLNHSNSDFLSIPR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0288 352 Gene3D - 183 272 - -
Ssu5g0288 352 Pfam Cyclin, N-terminal domain 61 182 IPR006671 -
Ssu5g0288 352 MobiDBLite consensus disorder prediction 305 336 - -
Ssu5g0288 352 SUPERFAMILY Cyclin-like 185 284 IPR036915 -
Ssu5g0288 352 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Ssu5g0288 352 Gene3D - 71 182 - -
Ssu5g0288 352 SMART Cyclin_C_2 184 315 IPR004367 -
Ssu5g0288 352 SMART cyclin_7 87 175 IPR013763 -
Ssu5g0288 352 Pfam Cyclin, C-terminal domain 184 293 IPR004367 -
Ssu5g0288 352 PANTHER CYCLINS 32 334 IPR039361 -
Ssu5g0288 352 PANTHER CYCLIN D3.1 PROTEIN 32 334 - -
Ssu5g0288 352 MobiDBLite consensus disorder prediction 308 336 - -
Ssu5g0288 352 CDD CYCLIN 81 174 IPR013763 -
Ssu5g0288 352 SUPERFAMILY Cyclin-like 51 182 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0288 Ssu-Chr5 6083306 6085008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0288 9 295 Core Cell Cycle Gene Families AT4G34160 51.903 2.78e-96 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0288 5 6083306 6085008 Ssu7g0441 7 8356897 8358134 ECH
Ssu5g0288 5 6083306 6085008 Ssu5g0288 5 6083306 6085008 ECH
Ssu5g0288 5 6083306 6085008 Ssu1g3753 1 94230116 94231651 PCT