Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0287 ATGGCCGCTAGGCATATTCTGCTTCACCGCCTTCGGTTGCGTAGCTTCCAAGGGTTCACCGTCGTGGCGCCTCAGGGCCACCGTCTGTGGTGCAGTGCCACGTCATCATCGGAAGAACCAAACCCGGACTCGAGTTGCGGGACCCACACCCACAGCCCCAATGTTGAGGTGGATGATGACCCCGAAtggaaggagaaagaagagaagattgTGAGGGACATTCAGCCAATCGTTACGCTAACCAGGCAAATTCTCCACTCACCaagGTACAAGAACGGGGAGCTACTGATGATGGAGGACGAAAGAGCCGTGGTAGAGAACATTCTTATTTACCATCCAGATTATGAAGATAAGATCGGAAGTGGTCTGGTCTCTATTATGGTTGATCATCATCCCCTATATCTATATCCAAGGTGCCTTTTTGTTGTAAGAACTGATGGTAGCTGGATCGACTTCTCCTATCGGGTGTGCCTTGAggaatacattaaaaataagtacCATATAAGTGCAGAAAGGTTTGTTAATAAAAGGTTTCTTAAAGATCTTATTAAGCGTTGGGGTATGTGA 567 0.4444 MAARHILLHRLRLRSFQGFTVVAPQGHRLWCSATSSSEEPNPDSSCGTHTHSPNVEVDDDPEWKEKEEKIVRDIQPIVTLTRQILHSPRYKNGELLMMEDERAVVENILIYHPDYEDKIGSGLVSIMVDHHPLYLYPRCLFVVRTDGSWIDFSYRVCLEEYIKNKYHISAERFVNKRFLKDLIKRWGM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0287 188 MobiDBLite consensus disorder prediction 33 62 - -
Ssu5g0287 188 MobiDBLite consensus disorder prediction 33 52 - -
Ssu5g0287 188 Pfam Protein of unknown function (DUF3223) 83 158 - -
Ssu5g0287 188 Gene3D - 61 184 - -
Ssu5g0287 188 PANTHER - 4 180 IPR044673 -
Ssu5g0287 188 PANTHER DCL PROTEIN (DUF3223) 4 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0287 Ssu-Chr5 6032193 6043399 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0287 5 6032193 6043399 Ssu5g0287 5 6032193 6043399 ECH
Ssu5g0287 5 6032193 6043399 Ssu1g3754 1 94254342 94260640 PCT