Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0286 ATGGGCCAATCTGTGTCGTCCGTCGCAAGCCGTCGCGAGAGGGACCAATTCCACCGCCCCGCCAACGCCTCCAAGACCAGATCCACCACCTCGGTTTCTCCGATGGTCGGTCATTCTACTCATTCCCCCGGCGCCGGCGAAGACGACAGCGAAAACTGTTGTGTTGAGGCGGTGACCGATGGAAACGCTGACTACATCTCCGATCTCCCGAACGAGTGCCTGGATTCGGTGTTTCAGTTTCTCGGCTCCGCCGACCGGAACCGCTGCTCGCTCGTTTGCCGGCGGTGGCTGCAGATCGAAGGACAGAGCCGTCACCGGCTCTCTCTGAACGCCGAATCGGGCCTCTTTCCGGCGATCCCGTCGCTGTTCTCGCGCTTCGACTCGGTGACGAAGCTGGCGCTGAAGTGCGACCGCAGATCCGTGAGCATAGGAGACGACGCGCTCGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTCAAGCTCCGCGCGTGCAGAGAACTCACCGACGCCGGAATGGAAGCGTTCGCGAAAAACTGCAAAGGATTGAAGAAGCTCTCGTGCGGATCGTGCACGTTCGGATCCAAAGGCATGAACGCGGTGCTCGACAACTGCGCCGCGCTGGAGGAGCTCTCTGTGAAGCGCCTCCGCGGAATCACAGACTCGGCGGCGGCGGAGCCGATCGGTCCCGGCGTGGCGGCGTCGTCGCTCCGAACCGTCTGCCTGAAGGAGCTCTACAACGGCCAGTGCTTCGGCACGCTGATTCTCGGCGCGAAGAATCTGAAAACCTTGAAGCTTTTCCGTTGCTCCGGCGATTGGGACCGGCTCTTTCAACTAATGGCGGATCGAGTCGCGAACGTCGTTGAGGTTCACCTCGAGAGGCTCCAGATTAGCGACGTTGGATTGCAAGCGATCGCGAATTATTCGAGTTTGGAGATTTTGCATCTTGTTAAGACTCCTGAATGTTCTGATATTGGACTTGTTGCTATTGCAGATAGGTGCAAGCTTTTGCGGAAGCTTCACATTGATGGATGGAAGGCGAATCGAATTGGCGATGAAGGGTTAATCGCTGTTGCAAAAGGTTGCCCTAATTTGCTTGAGTTAGTGCTAATTGGGGTTAACCCTACTAAGGCGAGTTTGGAGATGTTGGCGTCTAATTGCCAGAATCTTGAGCGGTTGGCTTTGTGTGGAAGTGATACGGTTGGTGATCCTGAGATATCTTGTATTGCGGCCAAGTGTGTGGCTTTGAAGAAACTTTGCATTAAGAGTTGTCCTGTTTCGGATCAGGGGATGGAGGCATTGGCGAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAGTGTAAGGGGGTTACCCTTGAGGGTGGGGATTCGTTGAGGAGGACTAGGGGGTCAATTGCTGTTAATTTAGATACTGGTGATCCAGAACCTTTGGAAGCTAGTGCTAGTGATGGAGGGGCACAGGACAATGGCCTGGAGTTTCCTCCAATGCATCCCCAAATTGTGCCGGCGGGGGCGGCAGCGTCTGCGTCTGCGTCTAGCAGCACGGCGCGGTCTAGTTCGTTCAAGTCGAGGTTAGGGTTTTTGTCCGGGAGGAGTTTAGTGGCTAGCACTTTGAGGAGATGGTCGGGTGGGAGCACTAGTGCACGCCATGGTTAG 1665 0.5592 MGQSVSSVASRRERDQFHRPANASKTRSTTSVSPMVGHSTHSPGAGEDDSENCCVEAVTDGNADYISDLPNECLDSVFQFLGSADRNRCSLVCRRWLQIEGQSRHRLSLNAESGLFPAIPSLFSRFDSVTKLALKCDRRSVSIGDDALVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGITDSAAAEPIGPGVAASSLRTVCLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMADRVANVVEVHLERLQISDVGLQAIANYSSLEILHLVKTPECSDIGLVAIADRCKLLRKLHIDGWKANRIGDEGLIAVAKGCPNLLELVLIGVNPTKASLEMLASNCQNLERLALCGSDTVGDPEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTLEGGDSLRRTRGSIAVNLDTGDPEPLEASASDGGAQDNGLEFPPMHPQIVPAGAAASASASSSTARSSSFKSRLGFLSGRSLVASTLRRWSGGSTSARHG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0286 554 Pfam Leucine Rich repeat 155 178 IPR001611 GO:0005515
Ssu5g0286 554 Pfam Leucine Rich repeat 417 436 IPR001611 GO:0005515
Ssu5g0286 554 MobiDBLite consensus disorder prediction 1 52 - -
Ssu5g0286 554 Gene3D Ribonuclease Inhibitor 107 485 IPR032675 -
Ssu5g0286 554 PANTHER F-BOX PROTEIN SKIP2 47 487 - -
Ssu5g0286 554 SMART fbox_2 69 109 IPR001810 GO:0005515
Ssu5g0286 554 SUPERFAMILY F-box domain 61 99 IPR036047 GO:0005515
Ssu5g0286 554 Gene3D - 65 104 - -
Ssu5g0286 554 MobiDBLite consensus disorder prediction 470 526 - -
Ssu5g0286 554 SUPERFAMILY RNI-like 116 465 - -
Ssu5g0286 554 MobiDBLite consensus disorder prediction 22 38 - -
Ssu5g0286 554 SMART LRR_CC_2 206 244 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 181 205 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 388 413 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 414 438 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 155 180 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 285 309 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 439 464 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 310 334 IPR006553 -
Ssu5g0286 554 SMART LRR_CC_2 335 362 IPR006553 -
Ssu5g0286 554 PANTHER UNCHARACTERIZED 47 487 - -
Ssu5g0286 554 MobiDBLite consensus disorder prediction 509 526 - -
Ssu5g0286 554 ProSiteProfiles F-box domain profile. 63 99 IPR001810 GO:0005515
Ssu5g0286 554 Pfam F-box domain 66 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0286 Ssu-Chr5 6006799 6008463 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0286 5 6006799 6008463 Ssu5g0286 5 6006799 6008463 ECH