Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0285 ATGGAATATCTAGGGATTGATCTGAGCTGCGCCGTGGGACCCCTTCGCCGCGGCAACTTTCCCGACAAGGATTGCCTGCTCCCTCTCATTTCCAAACTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTCCCCCAGATTATGAAAATTCTGAAGCATCAAAGTGTGCGAGGCCTTAGCATGATCTCCTTCGAGCTTGAAGTTGTTGGCTATACCATAGCGTTGGCTTACTGTCTCAACAAAGGTCTTCCGTTTTCGGCTTATGGAGAGTTATTGTTCCTTTTGATCCAAGCTTTAATATTGGTTGCCATAATCTACTACTATTCCCGACCTGTGCATACAATAACATGGATCCGGGCATTGCTATATTGTGCTGTAGCACCTACTGTCTTAGCTGGTCAAATTGATCCTATCCTCTTTGAAGCTCTGTATGCATCCCAGCATGCTATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCTAACAAAAGTACAGGGGAACTCAGCTTCATAActtcttttatgaattttggaGGTTCGATGGTTAGGGTATTCACCACCATCCAAGAAAATGCACCAAAAAGTGTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTAAGTCAGATAGTAGTATACCAAAAACCCCGGgttgaaaaggagaagaaaacgAAGTAG 708 0.4251 MEYLGIDLSCAVGPLRRGNFPDKDCLLPLISKLLGYAIVAASTTVKLPQIMKILKHQSVRGLSMISFELEVVGYTIALAYCLNKGLPFSAYGELLFLLIQALILVAIIYYYSRPVHTITWIRALLYCAVAPTVLAGQIDPILFEALYASQHAIFLFARIPQIWQNFSNKSTGELSFITSFMNFGGSMVRVFTTIQENAPKSVLLGYAIGVATNFTILSQIVVYQKPRVEKEKKTK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0285 235 Gene3D - 136 225 - -
Ssu5g0285 235 Gene3D - 29 113 - -
Ssu5g0285 235 Pfam PQ loop repeat 30 89 IPR006603 -
Ssu5g0285 235 Pfam PQ loop repeat 151 201 IPR006603 -
Ssu5g0285 235 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED 2 232 IPR016817 -
Ssu5g0285 235 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1 2 232 - -
Ssu5g0285 235 PIRSF Mpdu1 6 235 IPR016817 -
Ssu5g0285 235 SMART ctns 156 187 IPR006603 -
Ssu5g0285 235 SMART ctns 44 75 IPR006603 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0285 1 224 Miscellaneous Gene Families AT4G07390 77.232 4.45e-131 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0285 5 5994164 6000131 Ssu5g0285 5 5994164 6000131 ECH