Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0283 ATGGGTTCGACCATGACGATCGTGCTCGTGTTCGTGCTCTTTGCAGTTTCATCGGCTTTAGACATGTCGATAATCTCGTACGACAACGCGCACGCGGACAAGGCCACGTGGCGGAGCGACGAGGAGGTGATGTCGATGTACGAGCAGTGGCTGGTGAGGCACGGCAGGGTGTACAACGCGCTCggggagaaggagaagaggtTCCAGATCTTCAAGGACAACCTGCGCTTCATCGACGAGCACAACGCCGAGAACCGAACCTACAAGCTCGGGCTGAACCGGTTCGCGGATCTCACCAACCAAGAGTACCGGGCCAGGTACTTGGGAACCAGGATCGACCCGAACCGGAGGAAGGGTAAGAGCAGGACCCGGAGCAGCCGTTACGCGCCACGTGTCGGCGACAAACTACCGGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTCGTCCCAGTCAAAGACCAAGGAGGCTGCGGGAGCTGTTGGGCATTCTCAGCAATTGCTGCGGTGGAAGGAATAAACAAGATAGTGACAGGCGATCTGATTTCATTATCAGAACAAGAGTTGGTGGATTGTGATACATCATATAACCAAGGATGCAATGGAGGACTTATGGACTATGCTTTCGACTTCATCATCAACAATGGTGGCATCGATTCCGATGAGGATTACCCTTACCTTGGTTTTGATGGTAGATGTGACACATACAGGAAAAATGCTAAAGTTGTTACTATTGATGGCTACGAAGATGTTTCTGCCTACGATGAGGCAGCCTTGAAAAAAGCCGTTGCAAATCAGCCAGTGAGCGTAGCTATTGAAGGAGGGGGCAGGGaatttcaattatatgtatctGGTGTATTTACTGGGAGATGTGGGACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGTTCAGATAAAGGTCATGATTATTGGATTGTAAGGAATTCATGGGGTGCTAGCTGGGGAGAGGATGGCTATATCAGATTAGAGAGAAATCTGGCTAATAGCAGATCAGGCAAGTGTGGAATTGCAATTGAGCCATCTTATCCCATTAAGACAGGTCCAAATCCCCCCAATCCTGGACCATCACCCCCTTCACCCGTGAAGCCACCAAATGTTTGTGATAATTACTACAGCTGTGCCGATAGTGCTACTTGTTGCTGTATCTTCGAGTTTGGACAAATTTGCCTCGAGTGGGGTTGCTGTCCTCTTGAAGGTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCTCATGACTATCCCATCTGCAACATCAGAGCTGGAACTTGTGTCAAGAGCAAGAACGACCCATTTGGAGTGAAGGCATTGAGGCGTACTCCGGCTAAACACCATTGGGCCTTTGGAGGTAAGAACAAGATCAGCAGTGCTTAA 1398 0.49 MGSTMTIVLVFVLFAVSSALDMSIISYDNAHADKATWRSDEEVMSMYEQWLVRHGRVYNALGEKEKRFQIFKDNLRFIDEHNAENRTYKLGLNRFADLTNQEYRARYLGTRIDPNRRKGKSRTRSSRYAPRVGDKLPDSVDWRKEGAVVPVKDQGGCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFDFIINNGGIDSDEDYPYLGFDGRCDTYRKNAKVVTIDGYEDVSAYDEAALKKAVANQPVSVAIEGGGREFQLYVSGVFTGRCGTALDHGVVAVGYGSDKGHDYWIVRNSWGASWGEDGYIRLERNLANSRSGKCGIAIEPSYPIKTGPNPPNPGPSPPSPVKPPNVCDNYYSCADSATCCCIFEFGQICLEWGCCPLEGATCCDDHYSCCPHDYPICNIRAGTCVKSKNDPFGVKALRRTPAKHHWAFGGKNKISSA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0283 465 CDD Peptidase_C1A 137 351 IPR039417 -
Ssu5g0283 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 381 - -
Ssu5g0283 465 Pfam Granulin 386 433 IPR000118 -
Ssu5g0283 465 Pfam Papain family cysteine protease 136 352 IPR000668 GO:0006508|GO:0008234
Ssu5g0283 465 SMART Inhibitor_I29_2 47 103 IPR013201 -
Ssu5g0283 465 SUPERFAMILY Granulin repeat 372 406 - -
Ssu5g0283 465 MobiDBLite consensus disorder prediction 113 135 - -
Ssu5g0283 465 Gene3D Granulin 373 435 IPR037277 -
Ssu5g0283 465 SMART GRAN_2 375 432 IPR000118 -
Ssu5g0283 465 SMART pept_c1 136 352 IPR000668 GO:0006508|GO:0008234
Ssu5g0283 465 Gene3D Cysteine proteinases 26 354 - -
Ssu5g0283 465 SUPERFAMILY Cysteine proteinases 39 352 IPR038765 -
Ssu5g0283 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Ssu5g0283 465 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Ssu5g0283 465 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Ssu5g0283 465 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Ssu5g0283 465 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Ssu5g0283 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Ssu5g0283 465 PANTHER CYSTEINE PROTEASE 28 381 - -
Ssu5g0283 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0283 Ssu-Chr5 5964152 5968445 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0283 5 5964152 5968445 Ssu5g0283 5 5964152 5968445 ECH
Ssu5g0283 5 5964152 5968445 Ssu1g3760 1 94377162 94383773 PCT