Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0280 ATGTCTGGTCCATTTCCCACTGCTGCTCTAGGCATGAGCACTTTAACATTCTTGGACATAAGGTTCAATTTCTTCTCTGGGGCAGTCCCACCACAAATATTCACACAAAACCTCCAAGTCCTTTTCATAAACAACAACATCTTCACTCAAGGGTTGCCTGATAATTTAGGGACCACTCATATTCTCTTACTCACCTTAGCAAACAACAAGTTCATGGGTCCAATCCCAAGAAGCCTTCCCAAGGCTCTGGCCACTCTCACTGAGGTACTATTACTTAACAACCAGTTAACTGGTTGTTTGCCTTATGAGATTGGGTTTCTTGAAGAGGCCAGAGTGTTTGATGCTGGGAACAACCAGATTACAGGTCCTTTGCCATTTTCTCTGAGTTGCCTTGAGAAAGTGGAGGTGCTCAATTTGGGTGGAAATCTTTTGTATGGCATGGTGCCAGAAGTGGTGTGTGCAGGGTTGGTGAATTTGGGTAACTTTTCACTGTCAGATAACTATTTCACACATGTGGGGCCACTGTGTAGGATGCTGATTCGGAGAGGGGTTCTTGATGTTAGGAACAATTGTGTTCCTGATCTTCCGTTCCAGAGATCAGTGGCTGAGTGTGCGGAGTTCTTTGCAACACCAAGGATGTGTCCCTTCATGTGGTTTCATAGTCTCATCCCTTGTAAGCTTCCTTTTCAAAATTCCATTCCTTAG 705 0.4454 MSGPFPTAALGMSTLTFLDIRFNFFSGAVPPQIFTQNLQVLFINNNIFTQGLPDNLGTTHILLLTLANNKFMGPIPRSLPKALATLTEVLLLNNQLTGCLPYEIGFLEEARVFDAGNNQITGPLPFSLSCLEKVEVLNLGGNLLYGMVPEVVCAGLVNLGNFSLSDNYFTHVGPLCRMLIRRGVLDVRNNCVPDLPFQRSVAECAEFFATPRMCPFMWFHSLIPCKLPFQNSIP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0280 234 Gene3D Ribonuclease Inhibitor 1 201 IPR032675 -
Ssu5g0280 234 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 232 - -
Ssu5g0280 234 PANTHER BNAA09G53810D PROTEIN 1 232 - -
Ssu5g0280 234 SUPERFAMILY L domain-like 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0280 Ssu-Chr5 5859531 5860235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0280 2 213 Leucine-rich Repeat extension Gene Families AT3G24480 42.925 6.65e-51 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0280 5 5859531 5860235 Ssu5g0280 5 5859531 5860235 ECH