Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0278 ATGGTGGAAGCGGGTGAGGATTGTTGCGTGAAGGTCGCGGTGCACGTGCGACCTCTCATCGGGGAGGAGAAGGCGCAGGGATGCAAGGATTGCGTGAGCGTCTTGCCCGGGAAGCCTCAGGTACAAATTGGTGCACATTCCTTTACATTTGATCATGTTTATGGGAGCACTGGTTCTCCCTCATCTGCCATGTTCGATGAATGTGTTGCTTCCCTTGTTGATGGTTTGTTCCAAGGATATAATGCTACTGTTCTTGCATATGGTCAGACAGGTTCTGGGAAAACATACACCATGGGCACTGGCTTTAAAGATGGTTGCCAAGAGGGAATAATACCCCAAGTTATGAGTTCCTTGTTTAACAAAATTGAGACCTTAAAGCATCAGATTGAATCTCAGTTGCATGTTTCCTTTATTGAGatTCTCAAAGAAGAAGTAAGAGACTTGCTGGACCCATCCTCTATGAACAAACCAGAAACTGCAAATGGACATGCAGGGAAAGTGGCTATTCCTGGGAAACCACCAATACAAATTCGTGAGTCATCAAATGGTGTCATTACTCTAGCAGGATCTACTGAAGTCAGTGTTACAACGCTAAAAGAAATGGCTGCTTGCCTAGAACAAGGATCATTGAGCAGAGCAACTGGAAGCACAAATATGAACAACCAATCCAGTCGTTCACATGCTATCTTCACCATCACATTAGAGCAAATGCGGAAGCTCAATAGTCCTAGTGAGATTAGTTTAAATGATACAATGAATGAAGAATATCTTTGTGCCAAGTTGCACTTGGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACGGGGTCTGATGGTCTGCGTTTTAAGGAAGGTGTTCACATTAACAAAGGCCTTCTAGCCCTTGGTAATGTTATTAGTGCACTTGGtgatgaaaagaagagaaaggaaggggTTCATGTTCCTTATAGGGATAGTAAACTTACTAGGCTTTTGCAGGATTCACTTGGCGGTAACAGCAGAACTGTTATGATAGCCTGCATAAGTCCTGCTGATATTAATGCCGAGGAAACCCTTAACACTTTGAAGTATGCAAATCGTGCACGCAACATTCAAAATAAGCCTGTTGTCAATAGAGATCCCATGTCCAATGAGATGCTAAAAATGCGACAACAACTAGAGTATTTGCAAGCAGAACTTTGTGCTCGTTCTGGTGGCTCTTCTGAGGAAGTTCAGgTCCTCAAGGAAAGGATTTCTTGGCTTGAAGCAGCTAATGAGGATCTTCAATGTGAACTTCATGAATACCGTAGTAGATGCTCTGTTGTAGAACAATGTGAAAAGGATGCTTATGACAATAACACATGTAATGTAAAGGCTGATGGGCTTAAGAGGGGCTTACCTATCACAGCCTCTGATTATCCAATGAGCGAAACAACAGGGGATTCAAGGGAAATTGAAGAAGTAGCAAAAGAGTGGGAGCATACTCTTCTGCAAAATAGTATGGATAGAGAGTTGCATGAATTGAATAAACGCTTGGAGCAAAAAGAGTCTGAGATGAAGCTTTTTGGAATATCTGATGCTGAAGCGCTCAAGCAGCACTTTGGAAGGAAGATAATGGAACTGGAGGATGAGAAAAGAGCTGTTCAGCGAGAGAGGGATCGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACGCAGAAATCAGAGGATATCCATGcccaaaaattgaaaacacttGAAGCCCAGATTCTGGATCTGAAAAAGAAACAGGAGAGTCAGGTCCAGCTTTTGAAGCAAAAGCAAAAAAGTGATGAAGCAACGAAGCGATTGCAAGATGAAATACAATCTATAAAGGCCCAAAAGGTTCAACTGCAACAAAGGATAAAACAAGAGGCTGAACAGTTTCGGCAATGGAAGGCTTCTAGAGAGAAAGAGCTGCTGCAATTAAAGAAGGAAGGAAGGAGAAATGAGTTTGAACGGCATAAGCTGCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAGAGAAAGACCGAAGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAGTTGTTAGAAGCTCGTAAATCTTCCAGCCGAGACACTTCAGTTGCAATGAATGGAAGTGGAGCGAATGGACAGAGCAATGAGAAGTCCTTACAACGGTGGCTTGATCATGAGCTGGACGTCATGGTAAAAGAGCATGAAGTTCGTTTTGAGTACGAGAAGCAGAGCCAAGTGCGAGCTGCCCTTGCGGAGGAGTTAGCCATTCTAAAGCAAGTAAACGAGTTTGCTGCCAAGGTTCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCTAGAGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAGCTTCACTTGAGAGCATGCTAAGCATAACATCTAATTCACTTGTGGCAATGGCTTCTCAACTTTCTGAGGCCGAAGAACGAGAACGGGCCTTTACTAATCGTGGACGCTGGAACCAGTTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATTTGTTCAATTCTGTTGGAGATGCTAGGTGCCAACTGTGGGAGAAGGACACCGAGATCAGGGAAATGAGAGATCAAATCAAAGAACTTGTAGGTCTTTTACGGCAAAgtgaaatgaagagaaaggaaGCTGAGAAGGAACTAAAAGTGAGAGAGCAAGCTGTTGCAACCACATTGGCTACGCCAACTTCTGGAAACTCTCCAAATTCATTGAAACACTACGCGGAAGACATCACGGAACCTTTATCTCCGGAGTCTGTGCCAGTACAGAAACAGCGCAAATATATGCCAGGCATCACTAATGGCCAAGTGAGGGAATCAGCAGCATTTATAGATCAGAGTAGAAGGGTAATTTATTctccatttatattaaattggtATATGATTTTTCATTGGGCCAAGGATGTGAGATTTACTGTCAATGTAGATGATACCCATTGGGCAACTGTCAATGAAAAAACTAGCAATTGTTGGACAAGCTTCTGGCAAGCTATGGAGGTGGAAAAGAAGCCACCATCAGTGGTTACTACAATTCAAATGGAAGTGGCAGAAACCATGGAGACTTTCTGA 3096 0.4228 MVEAGEDCCVKVAVHVRPLIGEEKAQGCKDCVSVLPGKPQVQIGAHSFTFDHVYGSTGSPSSAMFDECVASLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQEGIIPQVMSSLFNKIETLKHQIESQLHVSFIEILKEEVRDLLDPSSMNKPETANGHAGKVAIPGKPPIQIRESSNGVITLAGSTEVSVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNSPSEISLNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELCARSGGSSEEVQVLKERISWLEAANEDLQCELHEYRSRCSVVEQCEKDAYDNNTCNVKADGLKRGLPITASDYPMSETTGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLEQKESEMKLFGISDAEALKQHFGRKIMELEDEKRAVQRERDRLLAEVENLAANSDGQTQKSEDIHAQKLKTLEAQILDLKKKQESQVQLLKQKQKSDEATKRLQDEIQSIKAQKVQLQQRIKQEAEQFRQWKASREKELLQLKKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSSRDTSVAMNGSGANGQSNEKSLQRWLDHELDVMVKEHEVRFEYEKQSQVRAALAEELAILKQVNEFAAKVLSPPRGKNGFARASSMSPNARMARIASLESMLSITSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYLFNSVGDARCQLWEKDTEIREMRDQIKELVGLLRQSEMKRKEAEKELKVREQAVATTLATPTSGNSPNSLKHYAEDITEPLSPESVPVQKQRKYMPGITNGQVRESAAFIDQSRRVIYSPFILNWYMIFHWAKDVRFTVNVDDTHWATVNEKTSNCWTSFWQAMEVEKKPPSVVTTIQMEVAETMETF 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0278 1031 Coils Coil 598 639 - -
Ssu5g0278 1031 Pfam Kinesin motor domain 18 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 960 - -
Ssu5g0278 1031 MobiDBLite consensus disorder prediction 691 716 - -
Ssu5g0278 1031 CDD KISc_KIF4 8 365 - -
Ssu5g0278 1031 Coils Coil 672 692 - -
Ssu5g0278 1031 Coils Coil 862 896 - -
Ssu5g0278 1031 MobiDBLite consensus disorder prediction 696 716 - -
Ssu5g0278 1031 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 SMART kinesin_4 7 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 Coils Coil 404 431 - -
Ssu5g0278 1031 Gene3D Kinesin motor domain 2 392 IPR036961 -
Ssu5g0278 1031 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu5g0278 1031 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 1 960 - -
Ssu5g0278 1031 Coils Coil 567 587 - -
Ssu5g0278 1031 ProSiteProfiles Kinesin motor domain profile. 9 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g0278 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 395 IPR027417 -
Ssu5g0278 1031 Coils Coil 491 511 - -
Ssu5g0278 1031 Coils Coil 517 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0278 Ssu-Chr5 5828784 5841023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0278 10 388 Calmodulin-binding Proteins AT5G65930 32.637 6.76e-53 200
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0278 5 5828784 5841023 Ssu5g0278 5 5828784 5841023 ECH
Ssu5g0278 5 5828784 5841023 Ssu1g3763 1 94443206 94454492 PCT