Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0277 ATGGCCTCAGCCGTCGTGAATTTCGTGAACGCAACGTTGGATTGGGTGACGTTTGCGTTAGATGCTCCTTCTGCGCGAGCTGTGGTTTTTGGAGTCCATATCGGTGGACATTTGTTTATCGAAGTTTTTCTGCTGGTGGTCATACTGTTCTTGCTTTCACAGAAAAGTTACAAGCCTCCTAAAAGGCCATTAACAAACAAGGAAATTgatgagttatgtgatgaatgGGTTCCAGAACCCCTTATTCCTTCTCTTAATAAAGAGTTGCAGTATGAACCACCAGTGCTGGAGAgTGCTGCTGGGCCACATACCATAATTAATGGCAAAGAAGTTGTCAATTTTGCTTCAGCAAACTATCTTGGGTTTATAGGTCATCAAAAGCTACTTGACTCATGTTCTTCTGCTTTAGCGAAATATGGTGTTGGTTCTTGTGGTCCCCGTGGGTTTTATGGGACAATTGATGTCCACCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACCCCTGATTCTATTCTCTACTCTTATGGACTTTCTACCATGTTCAGTGCAATTCCTGCTTTCTCTAAAAAAGGAGATATAATTGTAGCGGATGAGGGAGTCCACTGGGGGATACAGAATGGCCTTTATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGACTCTTTAAGAGAAACTCTAGAGAACATTACTTCCAAATATAAGCGGACCAAGAATTTGAGGCGTTATATTGTTGTTGAAGCTGTCTACCAGAATTCTGGCCAAATAGCACCCTTGGATGAGATCattaaattgaaggaaaaatatCGTTTTCGTGTTTTGCTGGATGAGAGCAACTCAATTGGTGTGCTTGGAAGTTCTGGAAGAGGCCTCACCGAATACTGTGGAGTTCCAGTTGAGAAGATAGACATTATAACTGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACTGGAAGTGCAAGAGTTATAGATCACCAACGATTGAGTAGCTCTGGTTATGTCTTTTCTGCTTCTTTGCCCCCTTACCTTGCAAGCGCATGCAATTACAGCTATTGA 1083 0.4118 MASAVVNFVNATLDWVTFALDAPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWVPEPLIPSLNKELQYEPPVLESAAGPHTIINGKEVVNFASANYLGFIGHQKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRETLENITSKYKRTKNLRRYIVVEAVYQNSGQIAPLDEIIKLKEKYRFRVLLDESNSIGVLGSSGRGLTEYCGVPVEKIDIITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASACNYSY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0277 360 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 3 356 - -
Ssu5g0277 360 Coils Coil 225 245 - -
Ssu5g0277 360 Pfam Aminotransferase class I and II 110 357 IPR004839 GO:0009058|GO:0030170
Ssu5g0277 360 Gene3D - 125 360 IPR015421 GO:0003824
Ssu5g0277 360 PANTHER LONG CHAIN BASE BIOSYNTHESIS PROTEIN 1-LIKE 3 356 - -
Ssu5g0277 360 SUPERFAMILY PLP-dependent transferases 81 356 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0277 Ssu-Chr5 5794626 5800289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0277 1 335 Acyl Lipid Metabolism Gene Families AT4G36480 78.806 0.0 568