Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0275 ATGAATTCCGTCTTTCTCCCCAATGCAAACTCAATACATTTCAATTTCAAGTACCACGCAATTCACCCACTCTCCCCCGCGCTCTCACCGAAGCCCCTCCCTGGCCGCAGCCACCGTTACCCGCGCCTCCGCTGCTGCGTGGAGATCGACATGGTGAAGAATGGCCAGGGCATCTACGCCCCCAAAAACGACAAGGTCGTCGTCCTCTGGGACCTCGACAACAAGCCCCCCCGCGGGCCCCCCTTCGACGCCGCCGCCTCGCTCAGAACCCTCGCCGCGCGCTTCGGCGACGTCGTCGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTCACCCAGCGCCGCGAGCGCCGGAGCCTCGACATCCTCGAGCGCAAGGGCCTGGCCACCCCCTCGGAGCCCTACACGTGCGGCGTGTGCGGCCGCAGGTGCAAGACCCACCTCGACCTCAAGAAGCACTTCAGACAACTCCACCAGCGCGAGCGCCAGAAGAAGCTGAACCGCCTGAGGTCCCTCAAGGGGAAGAAGCGACACCGCTTCAAGGAGCGGTTTTTGCGCGGGAACCACAAGTACGACGAGGCGGCGAGGTCGCTGGCGGTGCCGAAGGTCGGCTACGGGCTCGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTGAAGACGGTGCAGGACAAGCCGCAGGCGGCGGATTGGGCGCTGAAGAGGCAGATGGTGCACTCGATGAGCAGAGGGATTGATTGGCTGTTTTTGGTTTCGGATGATTCGGATTTTTCGGAGATGCTGAGGAGGGCCAGGGAGGCGGATTTGGGGACGGTTGTGGTGGGAGATTGGGATAGGGCGCTCGGGCGGCACGCGGATTTGTGGGTGCCGTGGAGTGGGGTGGAGAATGGGAGGTGGATTTGGTGCCcaagagaaaggagaaaagaagaatggaagatgatgatgatgatgatgatggggTGTTTTTGA 987 0.6039 MNSVFLPNANSIHFNFKYHAIHPLSPALSPKPLPGRSHRYPRLRCCVEIDMVKNGQGIYAPKNDKVVVLWDLDNKPPRGPPFDAAASLRTLAARFGDVVDFSAYANRHAFVHLPQWVLTQRRERRSLDILERKGLATPSEPYTCGVCGRRCKTHLDLKKHFRQLHQRERQKKLNRLRSLKGKKRHRFKERFLRGNHKYDEAARSLAVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGRWIWCPRERRKEEWKMMMMMMMGCF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0275 328 PANTHER OS06G0166200 PROTEIN 45 306 - -
Ssu5g0275 328 SUPERFAMILY beta-beta-alpha zinc fingers 137 170 IPR036236 -
Ssu5g0275 328 Gene3D - 59 298 - -
Ssu5g0275 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Ssu5g0275 328 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Ssu5g0275 328 CDD PIN_LabA-like 152 282 - -
Ssu5g0275 328 PANTHER - 45 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0275 Ssu-Chr5 5758237 5759223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0275 13 303 C2H2 Transcription Factor Family AT5G52010 68.687 1.50e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g0275 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0275 5 5758237 5759223 Ssu5g0275 5 5758237 5759223 ECH