Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0274 ATGGAAGACAGGGACCACTGTTGTTCCAACAATTCAAcgatgacaaaaaaaagaagaagcagcAGCAGCCCAGAGAAGTCGAAGCAACAACACGGCGAGAAACCGTACAGAGGGATACGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCGAGGATTTGGTTGGGTTCTTACACGACACCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTGCGGGGCCCTTCCGCGCGCCTCAACTTCCCCGAACTCTTGTTCCAGGACCAGGACGGGAATGATTCGGTGCAGCACGCCGCAGGGAACATGTCCGCGGACTCCATACGCCGAAAAGCCACGCAAGTTGGCGCCAGAGTCGACGCTCTCCAAACCGCGCTTCATCACCACGCGTCTTCGCACTCGAGCTCCAACTCTCTCAAACCTGACCTCAACGAGTTTCCGAAACTCGAAGACCTTCAAGCTTGA 492 0.5488 MEDRDHCCSNNSTMTKKRRSSSSPEKSKQQHGEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDQDGNDSVQHAAGNMSADSIRRKATQVGARVDALQTALHHHASSHSSSNSLKPDLNEFPKLEDLQA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0274 163 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Ssu5g0274 163 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Ssu5g0274 163 MobiDBLite consensus disorder prediction 137 151 - -
Ssu5g0274 163 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 MobiDBLite consensus disorder prediction 1 36 - -
Ssu5g0274 163 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Ssu5g0274 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Ssu5g0274 163 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Ssu5g0274 163 MobiDBLite consensus disorder prediction 19 36 - -
Ssu5g0274 163 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0274 Ssu-Chr5 5733079 5733570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0274 12 131 AP2-EREBP Transcription Factor Family AT1G46768 66.667 7.09e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu5g0274 AP2 2.6e-11 CL0081