Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0271 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTTGGGTGCAAGCGCTTACGCCCCCTCGCCCCCAAGCTTTCCAACAacgacaccaccaccaccaccactattactCCACCTCCTGTCACAACTTTGGATCTCAAGAGCTTCATCAGACCCGAAAGTTCCTCCAGAAAACTTGGATCCTCCGGCGATGACAATAAGAGAGACCCACCTTCACCGCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAAGGATATTGGAGATGCTGTATAGAGGAGGGATGCGAACACCAAATGCTCAACAAATAGAGCAGATCACAGCCCAACTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAACCTAGGCCTTGCTCATAGTCCTCGTACTCCCACCACACTAGTGTCATCTCCCTTTAGTTATAGTGTAATAACTACTTTGGACACCACAAAACggGGGGAAGTAGTAGAAAGAGAGGAGGAAGATAGCCCGTCAAAGAAGTGTAGGAGTTGGGCATTTGAGTACTTGGAAGACCAAAGTTGGTCATCGTGGAAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 714 0.4762 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNNDTTTTTTITPPPVTTLDLKSFIRPESSSRKLGSSGDDNKRDPPSPQGQVETHIPGGTRWNPTQEQIRILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSSPFSYSVITTLDTTKRGEVVEREEEDSPSKKCRSWAFEYLEDQSWSSWKEEEHRTLELFPLHPEGR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0271 237 Pfam Homeodomain 91 150 IPR001356 GO:0003677
Ssu5g0271 237 MobiDBLite consensus disorder prediction 30 63 - -
Ssu5g0271 237 CDD homeodomain 91 152 IPR001356 GO:0003677
Ssu5g0271 237 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 237 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Ssu5g0271 237 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Ssu5g0271 237 Gene3D - 90 157 - -
Ssu5g0271 237 SUPERFAMILY Homeodomain-like 90 154 IPR009057 -
Ssu5g0271 237 SMART HOX_1 88 155 IPR001356 GO:0003677
Ssu5g0271 237 MobiDBLite consensus disorder prediction 28 95 - -
Ssu5g0271 237 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0271 Ssu-Chr5 5656753 5658064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0271 1 157 Wox Gene Family AT1G46480 65.031 3.75e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu5g0271 Homeodomain 2.6e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0271 5 5656753 5658064 Ssu5g0271 5 5656753 5658064 ECH