Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0268 ATGGGAGACCATGCGGGTGCTTTACTCCCTCCCGGTATCGGGTTCTGCCCCTCCGAAGAGCTTCTTCTCGGCTATTACTTAACCAACAAGAATCACAACCGGGAGCGGGATTTCGACGGTTCTGATTTGATCAAGGAACTGGACCTCTACAATCACTACCCCTTCGAATTACCGGACTCTGCGTGCTTTTCGTACGGTTATCAAGGGAGGAAGAGGCATTGGTTCTGTTACACCGTTAGAAAAGAGACGAAACGCGGAAGCAGAAATGTGAAAAGCGGGTTCTGGCTCCGAAAGGGAAGGGTTCTGGATATTTTCGGTAACGGTGGGAACGCCGTTTTGGGCACGAGGACGGCTTTCGTTTTCTATGCCGGCAATTCCGTGAAAAACGCTATCAGAACCGATTGGATTTTGTACGAATATGCGTTGGTTGACCGCGTTATGGCTCCGTTCGTGCTTTGCCGTGTGGTGAATAAGCCTCGTCATGAGAATAATCCGTCGGAAATTGCTCTCGGCTCTAACGCCGACGGTGGTGACTCTCCGGCGGTGCGTCACGTTGGTGTTCAGCACGATGGATTTGTCGGGACTGATGTTGTTGGTGCTAAGGTGTGTGATGATGTCTTTGTTGCTGGAGAGAATGGGATTGCTGAGAATCCAGTTGGCTGTGGTGGTGAACATGATGATGGTGCTGCACCTGTTTCAGTTCCTCAGGGAAGTCAGCCGGAAAGGCTTTTTGGACTTCCCAATGGCAGTGAAATGTCCATTGAAGCTATGACATCTCAGCAACATATACTTTCCATTCTAAAGGAGGATTTCATAGAATTGAATGATATTGCATAA 837 0.491 MGDHAGALLPPGIGFCPSEELLLGYYLTNKNHNRERDFDGSDLIKELDLYNHYPFELPDSACFSYGYQGRKRHWFCYTVRKETKRGSRNVKSGFWLRKGRVLDIFGNGGNAVLGTRTAFVFYAGNSVKNAIRTDWILYEYALVDRVMAPFVLCRVVNKPRHENNPSEIALGSNADGGDSPAVRHVGVQHDGFVGTDVVGAKVCDDVFVAGENGIAENPVGCGGEHDDGAAPVSVPQGSQPERLFGLPNGSEMSIEAMTSQQHILSILKEDFIELNDIA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0268 278 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Ssu5g0268 278 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 277 - -
Ssu5g0268 278 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Ssu5g0268 278 Pfam No apical meristem (NAM) protein 10 142 IPR003441 GO:0003677|GO:0006355
Ssu5g0268 278 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Ssu5g0268 278 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 6 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0268 Ssu-Chr5 5596123 5598914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0268 5 245 NAC Transcription Factor Family AT1G32510 28.185 2.79e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g0268 NAM 2.9e-18 No_clan