Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0266 ATGCAAGGTCAGAGGGGTACACTTGGTTCCTTGCCAGAAACCATAGAATTCGATTGTGGATCTACATCAAGTACTGCTACAGTTGATCAGCATATTTTCTGGAATAATATGCGGAATCCTGCAGAAAATCAATATGTACTTTCTCCCAGTGATATAAACCCTTCTTACGTGAATTCTATAAACCATGAGTGGCAGAACTTGAGTGGATGGAGCGTAGGTGAGCCAAGTTCCAGTAATACACAGAATGAGGTTAACAACAATGAGCAGAAAAGAGAGCTAGGATTATCTTCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCATTGAACAATGTCAATACAAGTCCTATTTATATGCACAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACTTAAATGCAAGTTTAGCAGATAGTGGCAATGATAATAGCTATCATGTGGAACATCCTCCTAACTTGAACAAGTCTTGTGGACCGGTAAACGAGCATATTCCACCTGCAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAGCGAATGGCTTTTTAGTTGAGGATACTGATGGTAGGCCAGGTTGTTCTCTTGACACCCGCCGTGTATCCTGTAAAAGAAAGGCTGTTGAACGAAATGTTGGACAATCTTCAGACGGTGGAAGTTCTAGCTATAGTCAGCAAACAGATGATAGTACTTGGAACCCTCTTTCTACTCAGGATTATGGGGGGAGCAGTTTTAACAGATCTGCCCCAACAGAACAGGTAAACGCAAGACTTGGCCTGAGTACGGGGGACGGAGCCTCTGATAGCGTTCCTCGGTCAAATGTTGCAGGAAGCTCAGAAAGCTACCACAGAAATTTTCGTTTGAGGATAAATCCTTCAAGTCAACAAATTTCCATTCCTCCCACTGCAATCTCAGGTGGGAATGTTATTAGGAATTCTGCTGTTTCTTCACCCTCTCCAATATTGCAACGATTTCATCCTGTTGATAATTCTTTGGACTTGAGGTCAATACCACCTGTTGATACTATGGTTCCTCAAAGTCAGCCTCTTGTTATTCATGTTCCTGCGCTACCAAGGAATGTGCAATCATTCAGGTGGAGTGGTGGTTCCAGCTCAACAAACAACCATTCAACAAACTCAGTTATATGCGCAGATAGAAATAATCTACCGAATGAGGAAACAAGCTCAAGAAGTATGCCTAGAAACATTATGGAATATCCAATGTTTGTGCCTCCAACCAATTTAAGAAATGTAGTTCGAAATCCAGCTAGAGCTTCAAATAGTGCTAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGCGGACTGGGTCAAATTCAGCTGTCAATCCACCGTCTGCCTCGGCATGGGTTTCTCGCCCTAATCCTCAGCAGTATCCACGCAGTTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAGGCAATAATTATTCTTCCTTCCGTGGTCCTTCTACTTCATCTGAATCAAGGGGACTGTCACCTGGGGTAAACCCATTTGAGAGGCCAGGTGACAGTGAATTTGGAATTCCATATTCATTACGATCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTAGTATCTGAGCTCCGCAATGTGTTAGGCCTCATGCGAAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCTCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTGGATAACATGTCTTACGAGgAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTGAGTGAGGAGACCATATTGAAAcatttgaagaagaagaagtattCAGCTGAACCAGGTTTTCAGCACGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAGATGGAGATGATATAGGATCACTGGATTGTGGGCATGATTACCATAGCGACTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2097 0.4278 MQGQRGTLGSLPETIEFDCGSTSSTATVDQHIFWNNMRNPAENQYVLSPSDINPSYVNSINHEWQNLSGWSVGEPSSSNTQNEVNNNEQKRELGLSSSISSGAIAGPRLEERRFEPNNTFSLNNVNTSPIYMHSSNSHLVPQNLNLNASLADSGNDNSYHVEHPPNLNKSCGPVNEHIPPAIGSGPFLLPSGANGFLVEDTDGRPGCSLDTRRVSCKRKAVERNVGQSSDGGSSSYSQQTDDSTWNPLSTQDYGGSSFNRSAPTEQVNARLGLSTGDGASDSVPRSNVAGSSESYHRNFRLRINPSSQQISIPPTAISGGNVIRNSAVSSPSPILQRFHPVDNSLDLRSIPPVDTMVPQSQPLVIHVPALPRNVQSFRWSGGSSSTNNHSTNSVICADRNNLPNEETSSRSMPRNIMEYPMFVPPTNLRNVVRNPARASNSANLSIPGNVGSSSRTGSNSAVNPPSASAWVSRPNPQQYPRSLSEYVRRSLFSPGLEAAGSSGNNYSSFRGPSTSSESRGLSPGVNPFERPGDSEFGIPYSLRSLAVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHLKKKKYSAEPGFQHEAEPCCVCQEEYKDGDDIGSLDCGHDYHSDCIKQWLMHKNLCPICKTTGLAT 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0266 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 695 IPR013083 -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 499 533 - -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 226 294 - -
Ssu5g0266 698 SMART ring_2 651 691 IPR001841 -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 378 412 - -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 217 294 - -
Ssu5g0266 698 CDD RING-H2_TTC3 650 692 - -
Ssu5g0266 698 SUPERFAMILY RING/U-box 642 694 - -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 71 100 - -
Ssu5g0266 698 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Ssu5g0266 698 Pfam Ring finger domain 651 692 IPR001841 -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 499 522 - -
Ssu5g0266 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 697 IPR045191 GO:0061630
Ssu5g0266 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 697 - -
Ssu5g0266 698 MobiDBLite consensus disorder prediction 439 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0266 Ssu-Chr5 5555720 5559786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0266 1 698 C3H Transcription Factor Family AT2G15530 31.669 1.36e-80 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0266 5 5555720 5559786 Ssu5g0266 5 5555720 5559786 ECH
Ssu5g0266 5 5555720 5559786 Ssu1g3784 1 94820877 94827763 PCT