Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0265 ATGGCTGGTGACATGCACCAAACACAACCATCCTTAGGGAGAGCCTTGCCTCCTGATTCAGAAGAGTTCTCAACCTTGTTCAACCAACTCCTCCACAACTCTCCCCCACTAGAAGCAATGGACCCCAACCATTCAGCTTCTGATTTCACCCCACCCAAcaacatcaccatcaccaccaccaccaccaacaacaaccCTGTTCCTTCCTCTCCCTCAAATTTCCATTTCTCTGACCCCCATCATTACATCACTGCCTCTGATGCCAACACCTTCAAACAACACAACAATCACACCCCTGATTTCACTTCTGCTCCTGAGAAGAATGTGGAGGCATCGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGCAGAGCTGCAGAGTTCCATAATTTGTctgaaaagAGAAGAAGGAGTAGGATTAACGAAAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGGACTACGACCTATGATAATGCCTCCGACTGGATTGAACCTTGATGCGAGTAATGGACTTCAGAATTGTACCAGTGCAATTGCCTCATCTGCAAATGATGAAAGCTTGGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCCGTCTGTTTTACCCTCAGTGACAAATATATCTACGTCGGATACCTCTTCCAGTTTTCATCCCTCTATTAAGGATACACTCTACGGCAACATGCCCCAACTGTTTATGGATACAACAAAGATTGGAAAAATCCCTTCTCCAGATGTGTCTTAA 897 0.4169 MAGDMHQTQPSLGRALPPDSEEFSTLFNQLLHNSPPLEAMDPNHSASDFTPPNNITITTTTTNNNPVPSSPSNFHFSDPHHYITASDANTFKQHNNHTPDFTSAPEKNVEASKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMIMPPTGLNLDASNGLQNCTSAIASSANDESLVRHAFSFPKQCSISNPSVLPSVTNISTSDTSSSFHPSIKDTLYGNMPQLFMDTTKIGKIPSPDVS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0265 298 SMART finulus 132 181 IPR011598 GO:0046983
Ssu5g0265 298 PANTHER TRANSCRIPTION FACTOR SPATULA 42 274 - -
Ssu5g0265 298 MobiDBLite consensus disorder prediction 124 140 - -
Ssu5g0265 298 MobiDBLite consensus disorder prediction 46 105 - -
Ssu5g0265 298 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Ssu5g0265 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Ssu5g0265 298 Gene3D - 121 185 IPR036638 GO:0046983
Ssu5g0265 298 MobiDBLite consensus disorder prediction 1 140 - -
Ssu5g0265 298 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 274 IPR031066 -
Ssu5g0265 298 CDD bHLH_AtPIF_like 126 188 - -
Ssu5g0265 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0265 Ssu-Chr5 5543291 5546304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0265 126 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 70.642 2.72e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0265 HLH 3.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0265 5 5543291 5546304 Ssu5g0265 5 5543291 5546304 ECH