LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0260	ATGGCTCTTCTACTTGACAACTGTGAAAGCATTTTGCTCTCTCTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTAGACGACCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGCCCTCCCGAGTTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACctatggTTTTAGAAAGATTGTACCTGATAGATGGGAGTTCGCGAATGAGTTTTTCAAGAAAGGAGAGAAGCACTTGTTGTGCGAGATCCACAGAAGAAAAACCCCTCAGCAGCATCAACAACAAGTACAAGGCATGAACCATCACCACCAGTTTGGGGTCAACGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGCGTTTCCCCTCCCCATGACTCGGACGAGTTAGCCAATTGGTGTGACTCGCCCCCAAGTGGAGTAGGAAGTGGAAACAAccacagcaacaacaacaacaacagctaCAACACTGTCACTGCGCTTTCTGAGGACAACGAAAGACTGAGGAGAAGCAACAACATGCTCATGTCGGAGCTCGCACACATGAAGAAGCTTTACAACGACATAATCTACTTCGTTCAGAACCACGTCAAGCCCGTGGCACCGAGCAACACTTTCCCTTCTTTTCTACTCTGCAATAACAGCACACCACAACCACAAGCCTCTCCCATAATAAGTAACGTTTCAACGGTGCAAAGGCCAGTGAAGCAGTTTGTGGGGTGTTATTCCAATAATAACGCTAAGCCAGCGCGTGCTGTGAACTCTCCCACTAACAGTTCCATAACCATTGTTGAAGAAGAGCCTAGCAGTAACAGCTGCAAGACCAAGCTCTTTGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACTGTCTCGCGAGTTCCGAAACACATAAGGCGCGTTTGGTGTTGGAAAATGATGAATTAGGCTTGAATCTCATGCTCCCTTCAAATTGCTAG	1059	0.4665	MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTPQQHQQQVQGMNHHHQFGVNVPPFFPFHNRLSVSPPHDSDELANWCDSPPSGVGSGNNHSNNNNNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTFPSFLLCNNSTPQPQASPIISNVSTVQRPVKQFVGCYSNNNAKPARAVNSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNCLASSETHKARLVLENDELGLNLMLPSNC	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0260	352	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	Gene3D	-	17	116	IPR036388	-
	Ssu5g0260	352	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	PANTHER	BNAC06G00310D PROTEIN	12	350	-	-
	Ssu5g0260	352	Coils	Coil	186	206	-	-
	Ssu5g0260	352	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	MobiDBLite	consensus disorder prediction	164	184	-	-
	Ssu5g0260	352	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Ssu5g0260	352	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g0260	352	MobiDBLite	consensus disorder prediction	166	184	-	-
	Ssu5g0260	352	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	350	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0260	Ssu-Chr5	5485787	5487412	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0260	1	350	HSF	AT1G46264	56.349	5.23e-116	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ssu5g0260		HSF_DNA-bind	2.4e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0260	5	5485787	5487412	Ssu5g0260	5	5485787	5487412	ECH
	Ssu5g0260	5	5485787	5487412	Ssu1g3785	1	94859439	94860633	PCT