Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0257 ATGGGTTCCGAAGAACTATTCGGTTGCAGTTACCTGTTGCTGAAGCCAGAAGAGGCGAGTGTTGTGGATCTTGGGCGCCTCTTGTTCTCTTCTAACTTGAAAAACAGAAGATTCATCGAGTGCCCAGAAGAGGTTGAGGCAATAGACTTTCGGCAAAGATGGCTCCTCTTCATATCCATTGTGGCGCAGAAGGTCCTCCTTGCCTCAAGAAACTCCATGAAAAAGGTTGGGGACACCTTCGAGTTGTGGCTCAACCGTTTATCAAGTAATGGAGGCTTAATAAGGCTCTTGCTCAACATTCTACGAGGAAAGATGATAACACCGGAAAAATCATCGGCGGCATTCTTATCCGTGGTGGGCAACCTTGACACACGAGTTGATTTAGACAAGAGCATTAAGGAGAAAGATGCTAAGTACAAAGGGTTGCTCTCAATGATGGCTTCAAAATTATCGTATGAGAATGAAGAATTCGTTACTAACGCAGTCCAAAATCATTGGAATATGGACTTCTTGGGGCTAGACAGCTTCTGGAACGACTACCAGGAGGTCTGGTCCACACGAGCAATCATAGTGCAAGATACAAAGTCGGAGCCCAACTTGATTGTGGTTGCATTCAGGGGTACAGAGCCATTTGATGCGGACCAATGGAGAACAGATGTGGATATCTCCTGGTATGAGTTGCCCAATGTGGGTAGGATACATGGTGGGTTCATGAAAGCTTTGGGTCTTCAGAAGAACAGTGGATGGCCcaaagagatagagcaaagcAGCACTAGTGGTGGCCCCCAGCGTCGTTATGCCTATTATACAATCAGAGAGAAGCTGAGAGCCATGCTGAAGGCAAAAGAGGATGCAAAATTCATATTGACAGGGCACAGCTTAGGAGGAGCCTTGGCCATTCTATTTGCTGCGGTGCTCACACTGCATGAGGAGGCATGGCTGTTGGACAAGTTGGAAGGGGTTTATACATTTGGGCAGCCACGAGTAGGGGACAGTCAGTTTGGGGAGTTCATGAAGGACAAGTTGAGAAAGTATGATGTAAGGTATATGAGGTATGTTTATTGCAATGACGTGGTGCCTAGGATCCCTTACGATGACAAGACCCTCTTCTATAAGCACTTCGGTCCTTGCCTCTACTTCAACAGCATGTACCACGGACAGGTTCTAGAGGAGGAGCCAAACAAGAATTATTTCTCTTTGTTCTGGGTCATACCCAAGGTCCTAAACGCAGTTTGGGAGCTTATTAGAGGATTCCTTATCCCATTCGTAGAAGGTAAAGACTATGTACAGAATTGGTTCATGACGATGTTCAGGCTCGTTGGAATAATAATTCCAGGACTATCCGCTCATTGTCCTCCAGATTACGTCAATGTTACCAGATTGGGAACCTTACACGAATTTCTGGAGCTTCAAAACTCGCAAGGTTCCAAGGCTGAGTAA 1440 0.4549 MGSEELFGCSYLLLKPEEASVVDLGRLLFSSNLKNRRFIECPEEVEAIDFRQRWLLFISIVAQKVLLASRNSMKKVGDTFELWLNRLSSNGGLIRLLLNILRGKMITPEKSSAAFLSVVGNLDTRVDLDKSIKEKDAKYKGLLSMMASKLSYENEEFVTNAVQNHWNMDFLGLDSFWNDYQEVWSTRAIIVQDTKSEPNLIVVAFRGTEPFDADQWRTDVDISWYELPNVGRIHGGFMKALGLQKNSGWPKEIEQSSTSGGPQRRYAYYTIREKLRAMLKAKEDAKFILTGHSLGGALAILFAAVLTLHEEAWLLDKLEGVYTFGQPRVGDSQFGEFMKDKLRKYDVRYMRYVYCNDVVPRIPYDDKTLFYKHFGPCLYFNSMYHGQVLEEEPNKNYFSLFWVIPKVLNAVWELIRGFLIPFVEGKDYVQNWFMTMFRLVGIIIPGLSAHCPPDYVNVTRLGTLHEFLELQNSQGSKAE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0257 479 Pfam Lipase (class 3) 202 366 IPR002921 GO:0006629
Ssu5g0257 479 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 471 IPR044819 GO:0004806|GO:0006629
Ssu5g0257 479 SUPERFAMILY alpha/beta-Hydrolases 145 398 IPR029058 -
Ssu5g0257 479 Gene3D alpha/beta hydrolase 126 407 IPR029058 -
Ssu5g0257 479 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 471 - -
Ssu5g0257 479 CDD Lipase_3 143 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0257 Ssu-Chr5 5342611 5349342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0257 10 464 Acyl Lipid Metabolism Gene Families AT1G56630 55.011 0.0 530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0257 5 5342611 5349342 Ssu5g0257 5 5342611 5349342 ECH