Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0253 ATGAGAATGCGAGAGTTAGGGTTTCAGGAACGAAGGTCGTGGAGGCGCGCGGGTTCGCGAAGAGGCGGCGACACCAGCCCCGACTCCGTCATCTTCACTCTCGAATCCAACTTGAGCCTCTTCTCCTCCGCCTCGGCGAGCGTCGATCGATGCTCCTTCGCCTCCGACGCGCACGACCATGACTCTTTAGCCTCCGAAATCTCACTGCATTTGGCTACGCAGGAGCACGACGGTGATTTCGCCCATAGCGAAAGCTGGAGCGGTCCAGATCCGGATCCGGATCCGAATAAACGACGACATCAACAACGACGACATGTAGATGCAGATACAGATGCTGTGCACAAGAAGAAGGAACAAAATCGGTTCTACGGAAAAGGAGAGAAAGCGAAAGttcaaaaggaagaagacaGTGACGGTGGTGACACTGAGGACGGAAATCAACTCTCGGAATTTGATTCGGCGAGAAACTCTTTCTCTCTGGCTATCAAAGAATGTCAGGATCGGAGATCAAGATGTGAGGCGTTATTCAAGAAGCACGATCGGCGAAGGCCCGCTTCGTTAGATCTGAACAATGCCCTTGGCAATGGCAATGTTTCTTCGCCTCGCTTGGGATTAGGAGCCATGAAGAAGAGCACGCTTTGTTCTCGAAGGTCTGGCTCTGGCTCTGGCACTTTTCCAAGTCCTGGAACGCCTAATTATCTTCACGCTGGTGTTTCTATGCAAAAGGGATGGAGTTCGGAGCGAGTTCCTTTGCATACGAGTGCTACACGCAAGCAGGTTGGTGCGGCGCTGTTGCCTTTCAACAACGGGCGAACGTTGCCGTCCAAATGGGAAGATGCTGAGAGGTGGATTCTCAGTCCCGTTTCCGGTGACGGCACCGGCAGGGCCTCGCTTCCGGTGCCGCAGAGGAGGCCCAAGTCCAAGAGCGGGCCACTTGGGCCCCCTGGCGCTGCTGCTGTTGCGTATTATTCCTTATATTCCCCTGCGGTGCCTTTGTTTGAAGGTGGGAATTCGGGGAGCTTTATGCCGGCTTCTCCGTTTTCTGCTGCTGTTAGTGTCTCAGCTGCTGCTAGTGTCTCAGCTGCTGCTGATGGGTTAACGGCCAGTTCGGGTGGCAGTTGTGGGGTGCCCCCCACCAGAACTGATCCTTGCATGGCTCGCTCCGTTAGTGTCCATGGTTGCTCTCAGATGCAGAGCCAGTCATCATTGCCTGCCCAAgGGGAGAAATTTGATGGTTTCAAAGAAGCAGGCACCAATGTATCTCCTGCTGTTTCAAGGAGGGACATGGCAACTCAGATGAGCCCAGGGGGTAGCTCATGTTCCTCTCCCAATTTGAGGCCTTCTTTCTCTGCCTCCACTCCACCTTCCCTTCCTGTCACAGAGTTCAGGAGTTTGCCTTTCTCTAAAATGGATATCAGGGATGTGCCGGTAGATGAACGTGTAACCATGACAAGGTGGTCCAAGAAACACAGGGTCCTATTCTCTGGCAGAGGCTCAGAAAATGTTGACAGCTGCAAAATGAAAGAAACAAGCAGCCGATCTTTATCTTGGGACATTTCTGAAAAGTCAAAGACTGTTTCAAAGGCCAACAGGGAGGAAGCCAAAATCACTGCATGGGAGAACTTGCAAAAGGCAAAAGCTGAGGCAGCAATACGGAAACTTGAGATGAAGTTGGAAAAGAAGCGAGCATCATCTATGGATAAGATTATGAACAAGCTGAGAATGGCTCAGAAAAAAGCTCAGGAAATGAGAAGTTCAGTTTTAGCCAACCAGCCGCATCAAGTCGCCAGAACACCTCACAAGGCTATATTATTTCGGAGAACCAGCCAGATGGGTTCTTTAAGTGGTTGTTTCACCTGTCATGCCTTTTAA 1872 0.5107 MRMRELGFQERRSWRRAGSRRGGDTSPDSVIFTLESNLSLFSSASASVDRCSFASDAHDHDSLASEISLHLATQEHDGDFAHSESWSGPDPDPDPNKRRHQQRRHVDADTDAVHKKKEQNRFYGKGEKAKVQKEEDSDGGDTEDGNQLSEFDSARNSFSLAIKECQDRRSRCEALFKKHDRRRPASLDLNNALGNGNVSSPRLGLGAMKKSTLCSRRSGSGSGTFPSPGTPNYLHAGVSMQKGWSSERVPLHTSATRKQVGAALLPFNNGRTLPSKWEDAERWILSPVSGDGTGRASLPVPQRRPKSKSGPLGPPGAAAVAYYSLYSPAVPLFEGGNSGSFMPASPFSAAVSVSAAASVSAAADGLTASSGGSCGVPPTRTDPCMARSVSVHGCSQMQSQSSLPAQGEKFDGFKEAGTNVSPAVSRRDMATQMSPGGSSCSSPNLRPSFSASTPPSLPVTEFRSLPFSKMDIRDVPVDERVTMTRWSKKHRVLFSGRGSENVDSCKMKETSSRSLSWDISEKSKTVSKANREEAKITAWENLQKAKAEAAIRKLEMKLEKKRASSMDKIMNKLRMAQKKAQEMRSSVLANQPHQVARTPHKAILFRRTSQMGSLSGCFTCHAF 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0253 623 MobiDBLite consensus disorder prediction 91 137 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 424 456 - -
Ssu5g0253 623 Coils Coil 566 586 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 288 313 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 78 152 - -
Ssu5g0253 623 Pfam Remorin, C-terminal region 509 611 IPR005516 -
Ssu5g0253 623 Coils Coil 544 564 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g0253 623 PANTHER REMORIN FAMILY PROTEIN 105 621 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 397 456 - -
Ssu5g0253 623 MobiDBLite consensus disorder prediction 1 29 - -
Ssu5g0253 623 PANTHER OS02G0116800 PROTEIN 105 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0253 Ssu-Chr5 5311762 5315410 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0253 5 5311762 5315410 Ssu5g0253 5 5311762 5315410 ECH