Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0252 ATGGACAAgGAAACAGGGGTGGGTAGCATAAATACCTTGCAAAAGAAGCCCCTACGCATTGTTAGCGGGAGACCGTTGGGTTTTCGAGTTGTGACTCCATTCTTCTTTTCTACCGCTAAGAACAATAACATGGTCATCGCCGATTCCGATTACGAAGGTCCCGCTATAGAAGCCCTCGGTTCTCTCTTCAAGGTCACCCAAGTCTTCCTCTGGGACGATGGCCTTCAGGTTTCACCGTCAGCTGAACACTCGAAATTGGCTGAAGCTGATGACAATGTTCCTGATTTGAGTGACCTTATTGTACCCGAGGATTTGGAACTTACCAAACAGCTGAATGAACTAGGGCTCCCTCTTTCCTTCCAGACAAACAAGGAGAAAAATGGACCAGTAAAAGGCAAAAATAAGGGTAAACGTTCCAAGCATCCACATACTTGTCACAACCCTGTAGATGAAACTCTATATGAAGTGAGTGGGGAGGAGATTGCATCTTCTGCtaaatttcatgataaaactaGTAGTTCTTTATCTTGTATATCAATGCTAGGCCAAAGTGAATCATCTTACTGTGATGGTACAATGGATCTTGATATGACCCAATGTGCCTCTGGTGAAGGGGATAATTCAGCTTGCTGTACTGGGTTTGCTAGTGGTGTTTCCAGGGagataaataatgataatataaatcaGGTAGTGACTAATGATGCCCAGGATGGTGACTTTTTAATCAGCAATGATTGTGTTGATTTGAAAACTGCATCTGCTTCAGATACTGGAGTCTCTACTGGAAGCCATTTGACTGGTGCTGGTATCAATTATTGTGGGACAGAATATGGTGAAAGCTTGATTGACAGTGAATGTTTAGAAGTTTCACCAATTGTTGGCAAAAGTACAGATTGTGAAACTATTTACTATGATGATGGCCCTGCCACTTGTCATCAACATGCTATTGAACCAGAATTGCTTCCTGTGAGTTCAGAAGGGATTGGATGTGACAGAAATGATGTGTCAAATAATTATGGTGAACTTGGAGATTGGATGGCCTTCTGGGATACTTTCTATAAGAGAACATACTTCTATAATATTAGAACACACACTTCTACATGGGACGCACCCTCAGGGATGGAGCATCTGGCAATTGATGGGTGTATTGAATCAGATGAAAGTGAAACCCTAAAGGCAGAAGAGGAGTTTGGAGCACAAATTAACACTAAACCTCCTGAGGAAATCTTGATTGAAGAGAACTTGGAAGGAAAGCAACATGAAGAGTATTTGGCTGATTTTGGAGTTGCTGTTGGCAATTTGGTCTCTGATATCACCACACATAGTGAAGACCAATCTCTTGATCATTCAGATGAGTGTCTTGAGAGAAGTAGTTGCAATGATGGAGTTTCAAGCTGCTCAGTATTAAATACTCTGGATCATATCATCAGCTCTAATGAAAGATGCATTCAAGCAGCACCGGAGGTTAATCATACACCCTTGGAAAATATGGCAATTGATATGTCTGGATTGGATACTAAATCTGATCCTTTCAAGTCAAAACAcggaaagaaagtaaaaagaagacAAAGGCAGAGGAAATTATATAATGAAGCTGAAGATCTACACTTTCAAGAAATGCCTGAAGCGTGTTCTGCTACAATTGGCAAATATTGGTGTCAAAGGTATATTTTGTTCTCTAGATTTGATGATGGTGTAAAAATGGATGAGGAAGGATGGTTTTCTGTCACTCCAGAGGCTATTGCTCGATATCAAGCAATACGTTGTGCTAGTGGCATGATAATTGATGGTTTTACTGGTGTTGGTGGGAATGCTATCCAATTTGCACAACAGTGCAGGCATGTAATTGGAATTGATATTGATCCATTGAAGATTGAATATGCTAGGCATAATGCTGCTATTTATGGGGTGGATGATCAAATTGAATTCATAATGGGTGATTTCTTCCTTTTGGCACCAAAGTTAAAGGCCGATACTGTTTTCCTATCTCCACCATGGGGGGGACCTGATTATGCCAAGGCTACTACTTATGACATGAAGACAATGCTTAGACCACATGATGGATATACACTGTTTAATGTTGCAAAGGAGATTGCTTCCAGAATTGTTATGTTCCTTCCAAGAAATATCAATTTCAACCAATTGGCGGAGTTATCTCTATTGTCTTGTCCACCATGGTCGCTAGAGGTGgagaaagtttatttaaatggaaaacTGAAGGCGATCACTGCTTATTTCAATGATACAGCAGTTGGAGGGTGCTAA 2265 0.3965 MDKETGVGSINTLQKKPLRIVSGRPLGFRVVTPFFFSTAKNNNMVIADSDYEGPAIEALGSLFKVTQVFLWDDGLQVSPSAEHSKLAEADDNVPDLSDLIVPEDLELTKQLNELGLPLSFQTNKEKNGPVKGKNKGKRSKHPHTCHNPVDETLYEVSGEEIASSAKFHDKTSSSLSCISMLGQSESSYCDGTMDLDMTQCASGEGDNSACCTGFASGVSREINNDNINQVVTNDAQDGDFLISNDCVDLKTASASDTGVSTGSHLTGAGINYCGTEYGESLIDSECLEVSPIVGKSTDCETIYYDDGPATCHQHAIEPELLPVSSEGIGCDRNDVSNNYGELGDWMAFWDTFYKRTYFYNIRTHTSTWDAPSGMEHLAIDGCIESDESETLKAEEEFGAQINTKPPEEILIEENLEGKQHEEYLADFGVAVGNLVSDITTHSEDQSLDHSDECLERSSCNDGVSSCSVLNTLDHIISSNERCIQAAPEVNHTPLENMAIDMSGLDTKSDPFKSKHGKKVKRRQRQRKLYNEAEDLHFQEMPEACSATIGKYWCQRYILFSRFDDGVKMDEEGWFSVTPEAIARYQAIRCASGMIIDGFTGVGGNAIQFAQQCRHVIGIDIDPLKIEYARHNAAIYGVDDQIEFIMGDFFLLAPKLKADTVFLSPPWGGPDYAKATTYDMKTMLRPHDGYTLFNVAKEIASRIVMFLPRNINFNQLAELSLLSCPPWSLEVEKVYLNGKLKAITAYFNDTAVGGC 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0252 754 Pfam RNA cap guanine-N2 methyltransferase 593 748 IPR019012 GO:0001510|GO:0008168|GO:0009452
Ssu5g0252 754 Gene3D - 343 390 - -
Ssu5g0252 754 PANTHER S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED 63 749 - -
Ssu5g0252 754 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 555 709 IPR029063 -
Ssu5g0252 754 CDD AdoMet_MTases 594 674 - -
Ssu5g0252 754 MobiDBLite consensus disorder prediction 118 148 - -
Ssu5g0252 754 CDD WW 343 371 IPR001202 GO:0005515
Ssu5g0252 754 ProSiteProfiles WW/rsp5/WWP domain profile. 345 373 IPR001202 GO:0005515
Ssu5g0252 754 SUPERFAMILY WW domain 343 372 IPR036020 GO:0005515
Ssu5g0252 754 Gene3D Vaccinia Virus protein VP39 542 751 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0252 Ssu-Chr5 5289013 5302231 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0252 5 5289013 5302231 Ssu5g0252 5 5289013 5302231 ECH