Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0250 atgCAACTATACATAGATCTTgcaaacaacaaacaaaagcAGGTTGTCATAGGAACAAAGCTTGATGCGGCAACATTATTCCACTTGATTGATGAAAACTCCAAGGATGTCCCCATCATATCTCTAACCTCAACTACTAGTCCAGAAATAACGTCAATCCCATTGCCACACTTCATCCAAATGGGCCACGATGTTACCCTTCACATGCACTGCGTTGCATCCATCATTGCCCAATTCAATTGGAGAAAGGTCACAGCAATTTACGAACACAACAACTTATTTGCCTCTCATTCAGAAATATTAACAAGACTCTCTTATTCTCTTCGTCTAGTTAATGCTGAAATCGATCACCATGTAGTTTTTCCTTCACTCATCTCTCTTTCAAACCCAATAGAAAACATAGAACAAGAGCTTATTAGGCTTAACAATAAGAGCAACAAGGTGTTCTTTCTTATTCAATCTTCCTTAGAGTTTGCCACATTGCTATTTGAGAAGGcaaagaaaatgagaatgatGGGAAAAGGGTCGGTGTGGATCATCACAGATGATATAGCTACACATCTTGATTCATTGGATTCTTCTGTCACCTTCAACATGCATGCAAGGTGTTCTGGGGTGCAAAACCAACTTCATGGAAATGAGTCAAACATTCAAACGTTTCAAATTCATCATATTGGTCACTGGGGTCTGGTTTCACTTGTTGGGCATGAGGTGGTGAACACAACAACTAGTGCTGGTTCTGCTAGAGTGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAATTCCAAAAGGTTGGGTTTACAATAGTACTGAGGGAAGGCCTTTGAAAATTGGGGTTCCAGCTATTGATCCATGTCCTCAGTTTGTGAATATAAGCCATGATAAGAGACTAATAAATGAAACCCAATTCACGGGTTTCTCGATCAATGTTTTTGAATCAGTTGTGAAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTATGATCAAATAGTTGACCAAGTGAACAATAAgGACTTTGATGCTACTATTGGAAATATACAAGTGGTGGAACATAGATATGCATTTGCAGAATTCTCTCATCCACATGTTGAATCTGGTATAGCCATGGTAGTGAAACCTGAGAATATCAGGGTATTTGACTCCATCCATGATTTCCCAAGAGcctttgaaaataaagaaatcatgGCTTCTTTTACTATTGCCCCTCATGCCAATGTCTTCCAAGCTACGTATTGCAACAAAGGCTACATCAAAGCAAGACCTACTTTGAAGCTTGGTGGATTAGGCTTTATCCCTCCACAACAAGCAGCGGTGGTGGTTGGCCCAAATCCGCTTAAGGACACAACGAACAAAGGTGGTCGGTCCAGATCTACGATGGTGCTTGGTCTAGATTCGCTCAAGGCTAAGGTGAACGACAGTGGTTGTTAG 1455 0.3938 MQLYIDLANNKQKQVVIGTKLDAATLFHLIDENSKDVPIISLTSTTSPEITSIPLPHFIQMGHDVTLHMHCVASIIAQFNWRKVTAIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVVFPSLISLSNPIENIEQELIRLNNKSNKVFFLIQSSLEFATLLFEKAKKMRMMGKGSVWIITDDIATHLDSLDSSVTFNMHARCSGVQNQLHGNESNIQTFQIHHIGHWGLVSLVGHEVVNTTTSAGSARVLLSSVDWPGGLKTIPKGWVYNSTEGRPLKIGVPAIDPCPQFVNISHDKRLINETQFTGFSINVFESVVKRLPYHLPFVFVPFYGSYDQIVDQVNNKDFDATIGNIQVVEHRYAFAEFSHPHVESGIAMVVKPENIRVFDSIHDFPRAFENKEIMASFTIAPHANVFQATYCNKGYIKARPTLKLGGLGFIPPQQAAVVVGPNPLKDTTNKGGRSRSTMVLGLDSLKAKVNDSGC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0250 484 SUPERFAMILY Periplasmic binding protein-like II 270 443 - -
Ssu5g0250 484 PANTHER GLUTAMATE RECEPTOR 216 381 - -
Ssu5g0250 484 SUPERFAMILY Periplasmic binding protein-like I 3 196 IPR028082 -
Ssu5g0250 484 PANTHER GLUTAMATE RECEPTOR 5 221 - -
Ssu5g0250 484 Gene3D - 275 391 - -
Ssu5g0250 484 Pfam Receptor family ligand binding region 35 207 IPR001828 -
Ssu5g0250 484 PANTHER GLUTAMATE RECEPTOR 381 439 - -
Ssu5g0250 484 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 221 - -
Ssu5g0250 484 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 216 381 - -
Ssu5g0250 484 Pfam Bacterial extracellular solute-binding proteins, family 3 303 394 IPR001638 -
Ssu5g0250 484 Gene3D - 66 274 - -
Ssu5g0250 484 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 381 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0250 Ssu-Chr5 5264776 5269824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0250 225 380 Ion Channels AT5G27100 36.646 1.82e-23 102