Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0249 ATGGACGGTTACGATGGAACGGTGAGGCTCGGCGCCATCAACCTGAAGCACGATCGCGCCGATTTGGACTCTGGCGCCGACGTGTCGGTTTCCTCGCCGGTGACGAGGCAGAAAGCCGCCGCGGCGAAGCAATTCATCGAGAATCATTACAAAAACCATCTGCAAGGATTGCAGGATCGCAAAGATAGACGCCGAGCGCTTCAGAGAAAAGTGCAAGAATCTCAGATATCGGTTGAGGAGCAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTATATGAGGCTTCAGAGACGTAAAATTGGAATTGATGACTTCGAGCAATTAACGGTGATTGGGAAGGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACGGGAGAGATTTTGGCcatgaagaaattgaagaagtCAGAGATGCTTAGTCGTGGACAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCCGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCGTTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTAGATGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACTGGTCAAGAATCAACTAGTGAAACTGAAGGATATTCTGCCTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGCCGTGCATTGGCGTATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCGATCATGTATGAGATGCTTATTGGGTATCCGCCATTTTGTTCTGATGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCAAAGGATCTGATCTGTTGCTTACTATGTGATGTTGACTCAAGACTAGGAACCAGAGgagtagaagaaataaagGCTCATCCATGGTTCAAGTGTATTCAGTGGGACATGCTTTATGAATCAGAAGCTGCATATAGACCGACAGTCACTGGGGACTTGGatactcaaaattttgagaagtttccTGACGTAGAGGGCCCACCATCTGTAACAGCAACTGTTGGACCTTGGCGGAagATGCTGACGTCCAAAGACAACAATTTCATAGGATATACCTTTAAGAAGTCAGACATCCTTAAATCACTGGAAAGTTCAGATATCAGAGTAAACGGATCATCAAAAGCCCCTTCCTTGATTACCTTGTTAGGTGGGATTGATTTGCAAGATACTGTCATATCAGAAAATTTTTTGCATGCCCCAAGTTTGGTTGGGGTGGGGGAAGGGGATCTCCAATCTGATCAAATCATTAGTTTTCAGAAAAAGGGAAAACCGAATTCTAGGAGTGTCAAAGACCTGTTTGTGCGCATAGCTGCATCAAACAGCACCATAAGTtacatttttcttcttgaaatCTACCTTCCAAAACACAGTATTCTTCATGAGAGACAATCTAGATTTAATACAGCTCCTGACGGTGACGTGGCGATGGCTGGCCCCACGACACGTGTAAAAGCGCAGACAACTGTATTCCCATTTTGTTCCCCATCACCGCCCTTTTACTCCTCCTTCTTATTCATTCCTTCATTCACATCATTCCATTGCAGAATACGAGAGATGATGAAGAACAATTTCAGAGTAATGAGAGAAGAAACTCGAACGACTTCACCCACCTTCCACAACGCGGACAAACAGATGCAGGGCATTAGGGAGACGGAATCCACAATGGCTGCAGAGTGGACAGACGAGAAACACAGCATGTATATCAAGTCTATAGAAGCATCTTTTGTTAATCAGTTATATGATTCTAAGCAAATGAAAGGAACTTCCTATGACCCTGCTACCACTTCCGGCCAgttcAAGGTACTTCGTGGTGGCTGTTggcaaaaaatcaattttgagagAGTGAATCCGCAAATGAGTAGGATTAACCAGTGTCACGATTTGACGGAAAATCCATGGATTCAGCACTACCGATCTTCAAGCAAACAGAGAAGCATAGTAGCTCCTTCCCTTCAAGAAAGTGTTACTGCCACAAGTAAAGTTGTTGAATTAGGCCAAAGGAAAGGAATTTCCTCTGGATCAGGACATCTTCATTTGTGTGAATCTCGTGTCTGCCATAAGGATATGCTTTGTAGTGACACAGAGATGTCAGATCAGAACTTTGTTGATGAAGAAGTGAAAggcaaaaagcaaaataaaaaaagcaaggTGAAACGACAGAGATCTTTGATAATTGATGAAAACGGCAATGATcagATGGTTCCTAACAGAAAATCTTCTTCTGGTGGAGATTTTACCAAGAATTGTGTTTCTGCTGCTTAG 2616 0.4106 MDGYDGTVRLGAINLKHDRADLDSGADVSVSSPVTRQKAAAAKQFIENHYKNHLQGLQDRKDRRRALQRKVQESQISVEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEILAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESVLAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDLTGQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISAEAKDLICCLLCDVDSRLGTRGVEEIKAHPWFKCIQWDMLYESEAAYRPTVTGDLDTQNFEKFPDVEGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILKSLESSDIRVNGSSKAPSLITLLGGIDLQDTVISENFLHAPSLVGVGEGDLQSDQIISFQKKGKPNSRSVKDLFVRIAASNSTISYIFLLEIYLPKHSILHERQSRFNTAPDGDVAMAGPTTRVKAQTTVFPFCSPSPPFYSSFLFIPSFTSFHCRIREMMKNNFRVMREETRTTSPTFHNADKQMQGIRETESTMAAEWTDEKHSMYIKSIEASFVNQLYDSKQMKGTSYDPATTSGQFKVLRGGCWQKINFERVNPQMSRINQCHDLTENPWIQHYRSSSKQRSIVAPSLQESVTATSKVVELGQRKGISSGSGHLHLCESRVCHKDMLCSDTEMSDQNFVDEEVKGKKQNKKSKVKRQRSLIIDENGNDQMVPNRKSSSGGDFTKNCVSAA 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0249 871 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 505 - -
Ssu5g0249 871 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 505 - -
Ssu5g0249 871 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0249 871 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu5g0249 871 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Ssu5g0249 871 SUPERFAMILY Protein kinase-like (PK-like) 83 460 IPR011009 -
Ssu5g0249 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Ssu5g0249 871 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0249 871 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu5g0249 871 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0249 871 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu5g0249 871 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Ssu5g0249 871 MobiDBLite consensus disorder prediction 823 871 - -
Ssu5g0249 871 MobiDBLite consensus disorder prediction 844 871 - -
Ssu5g0249 871 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Ssu5g0249 871 Gene3D Transferase(Phosphotransferase) domain 1 305 428 - -
Ssu5g0249 871 CDD STKc_NDR_like 106 472 - -
Ssu5g0249 871 Coils Coil 64 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0249 Ssu-Chr5 5244494 5259189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0249 1 507 AGC Kinase Gene Family AT5G09890 78.516 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu5g0249 Pkinase 3.3e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0249 5 5244494 5259189 Ssu5g0249 5 5244494 5259189 ECH