Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0241 ATGGAGGATGTTGAAGACAAGCCATCCTCAGAACCCTCTTCAGTAAGTGCTGAACCGAAGCCACTAGCAGAAACCCCTGGAGAAAATACTGAAGTGATAAACCCACCCAATAATCAGTCTTCCATTGAAGCTCCCATCAACCAACTTAGTAATAATAGCAGAGTGGAGTCTGGAACTCATTTGCCAGTGACTAAGTTCTCTGACTTAGAAGTGTCCCTACATGCTTCTGATGGTCAAACTGTATTAGGACAAGATGAATATCTTCCCGCAGGTGATTCAGCTTCTACTCCTAAAGCTACCATTCATGGAACAGAACAAAGCCAGCAGGGAGCAACGGCTGCAGATTCCGAACCAGGAGCTTTAGAAGAAGATATCCTTAACAGGCAGCAGGATGGTGTTTCTACTGTCACTGCTAGCAGTGATGTTGATAATGTGATGAATCCCTCAACTTCCTCTTCTGAAACAAAGGAGTTACAGACCGGCTCCAAAGAACTAACAATAGAACAACCTCAAACCAAGGTTACTGATGTCCCCATAGATAATTCAGCTTCAACCCCAAATGTTACAGTTCATGTAACAGAAAAAAGCAACCAAGGAGCCATGTCTGCAGATTCTGAACCTGGAGCTTTAGAAGATATCTCAAACAGGAAGCAGGATGGTGGTTCTACTGTCTGTGCTGGCAGTGATGTTGATAATCAGATGGAACTCTCAACTTCCTCTTCTGAGGAGAAAGAGTTGCAGAATGACCACAAAGAACTAAAGATTGATCCATTTCAAACCAAGGATACTGATGTTGCTGCAGGAGCTGTTGGCTCACCTGCTGTCATTGTTGGCAATGGTGTTGATAATCAGATAAATCTCTTGGCTTCCTCTTCTGAAAAAATAGATTTGCAAAATGATCACAAAGAACTAGAGATAGAATTGCCTCAAACCAAGATTGCTGATGTGTCAGTCGGAGCTGTTGACTCACCTGCTGTCAGTGATGATAATCAGATTGCTGCAACAAGGGGCCTTATTGATACAGCAGCTCCATTTGAATCTGTCAAGGAGGCTGTTTCCAAGTTTGGAGGCATTGTGGATTGGAAGGCTCATAGAATCCAGACTGTGGAGAAGCGCAAGCATGTAGAACAAGAACTTGAAACGGCACAACTGGAGATCCCAGAGTACAGAAAAAAATCGGAGGCTGCTGAGCAAGCAAAAGTTCAAGTACTGCAGGAGCTGGACAGCACTAGGAGACTAATAGAAGAATTAAAACTTAACCTAGAGAGGGCACAAACAGAAGAGCGTCAGGCAAGACAGGACTCAGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAAGGCATCGCAGATGACTCTAGCGTTGCAGCCAAGGCACAGCTTGAGGTAGCTAAAGGTAGGTATTCATCCGCTATTACAGAGTTAACATCTGTGAAAGGGGAGTTGGAAGCATTGCGTGTGGAATATGCATCCTTAGTTGTTGAAAAAGATGAAGCTGTTAATAAAGCTGAAGTGGCCGTTGCTTCATCAAAGCAAGTAGAGAAGACAGTGGAAGACTTGACTATTGAACTGATTGCCACAAAGGAGGCATTGGAAACTGCACATGCCGCACACATGGAAGCAGAGGAACACAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCTCTCAATTGGGAGAAGGAACTTACACAGGCAGAAGAAGAACTCCAGAGTCTCAACCAGAAAATTTTGTCCGCTAAGGATCTCAAATCTAAACTGAACACAGCCTCCGTTTTGCTGCTTGATTTGAAAGCtgaattaaatgtttatatggAATCAAAGCCTAACCATGAAGGTGATGAAGAAGGAGTCTTGAAAGGAGAGCTAGAGGAACTGGAGAAGAAGACACACAATGAAATACAAGAAGCAGTTGCATCAGCCAAAAAGGAACTTGAGGAAATAAAGCTTAACATAGAGAAAGCCACAACTGAGGTGAATTACTTAAAGGTGGCCGCAGCATCGTTAAAATCAGAACTTGAACATGAGAAGTCATCTCTTGCCTCCATTAGGCAAAGAGAGGGAATGGCCTCCATTACGGTTTCATCTCTTGAAGCTGAACTAGACAACACTAGATCAGAAATGGTTTTGGTTCAGATGAAGGAAAAAGAAGGCAGAGAGAGAATCGTCGAGCTACCAAAGAAACTACAGCAAGCAGCTGAAGAGGCTAATCAGGCCAACTTGCTTGCTCAAGCAGCTCGTGAAGAGTTGCGGAGAGTAAAGGAGGAGGCGGAGCAAGCCAAGGCTGGTGCAAGTACAATGCAAAGTAAATTACTTGCAACTCAAAAGGAGATAGAGGCTGCCAGGGCTTCTGAAAGGTTGGCAATAGCAGCAGCTAAAGCATTGAAAGAGAGTGAATCTTCTAGGAACAACAGTGAAGTGGATTCATCCTCTTGGGTGACACTTTCGGTGGAGGAGTACTATCATCTCAGCAAACAAGCACACAAGGCAGAACAGCAAGCCAATATGAGGGTTGCAGCTGCTAATTCTGAAATTGAGATAGCTAAGGAGTCCGAATTAAAAACCTTGGAGAAGTTGAATGATGTGAATAGAGAGATGGCTGCTAGAAAGGAATCTCTGAAGATTGCAATGGACAAAGCCGAAAAGGCAAGGGAGGGAAAATTAGGTGTAGAGCAAGAACTAAGAAAATGGAGGGCTGAACACGAGCAACGAAGAAAGGCTGGTGAACTAGACCAAGGAGTGGTAAAGCATAGTAAAAGTCCCAGGGTTAGTTTTGAGAGGCATAAGGAAGCAAATAGTTTTGACCAAGCTCATAGCGCACCAATTCCTGTACGTTACTTATCCAGTCCAAAGGCTTATGTCCATGCAAACAAAGGAACTGTATCATCCCCAGAAGCAAAAGctggaaagaagaagaagaagtcatTTTTCCCATGGGTTTTGATGTTTTTTGGGAAGAAAAAGGCGCATCCAACACATTAA 2982 0.4323 MEDVEDKPSSEPSSVSAEPKPLAETPGENTEVINPPNNQSSIEAPINQLSNNSRVESGTHLPVTKFSDLEVSLHASDGQTVLGQDEYLPAGDSASTPKATIHGTEQSQQGATAADSEPGALEEDILNRQQDGVSTVTASSDVDNVMNPSTSSSETKELQTGSKELTIEQPQTKVTDVPIDNSASTPNVTVHVTEKSNQGAMSADSEPGALEDISNRKQDGGSTVCAGSDVDNQMELSTSSSEEKELQNDHKELKIDPFQTKDTDVAAGAVGSPAVIVGNGVDNQINLLASSSEKIDLQNDHKELEIELPQTKIADVSVGAVDSPAVSDDNQIAATRGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVEKRKHVEQELETAQLEIPEYRKKSEAAEQAKVQVLQELDSTRRLIEELKLNLERAQTEERQARQDSELAKLRVEEMEQGIADDSSVAAKAQLEVAKGRYSSAITELTSVKGELEALRVEYASLVVEKDEAVNKAEVAVASSKQVEKTVEDLTIELIATKEALETAHAAHMEAEEHRIGTVMARDQDSLNWEKELTQAEEELQSLNQKILSAKDLKSKLNTASVLLLDLKAELNVYMESKPNHEGDEEGVLKGELEELEKKTHNEIQEAVASAKKELEEIKLNIEKATTEVNYLKVAAASLKSELEHEKSSLASIRQREGMASITVSSLEAELDNTRSEMVLVQMKEKEGRERIVELPKKLQQAAEEANQANLLAQAAREELRRVKEEAEQAKAGASTMQSKLLATQKEIEAARASERLAIAAAKALKESESSRNNSEVDSSSWVTLSVEEYYHLSKQAHKAEQQANMRVAAANSEIEIAKESELKTLEKLNDVNREMAARKESLKIAMDKAEKAREGKLGVEQELRKWRAEHEQRRKAGELDQGVVKHSKSPRVSFERHKEANSFDQAHSAPIPVRYLSSPKAYVHANKGTVSSPEAKAGKKKKKSFFPWVLMFFGKKKAHPTH 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0241 993 MobiDBLite consensus disorder prediction 80 165 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 899 934 - -
Ssu5g0241 993 Coils Coil 631 658 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 216 241 - -
Ssu5g0241 993 PANTHER WEB FAMILY PROTEIN-RELATED 20 990 - -
Ssu5g0241 993 Coils Coil 556 600 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 899 937 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 97 114 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 30 60 - -
Ssu5g0241 993 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 20 990 - -
Ssu5g0241 993 Coils Coil 372 443 - -
Ssu5g0241 993 Coils Coil 482 502 - -
Ssu5g0241 993 Coils Coil 729 770 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 128 165 - -
Ssu5g0241 993 Pfam Weak chloroplast movement under blue light 336 904 IPR008545 -
Ssu5g0241 993 Coils Coil 856 883 - -
Ssu5g0241 993 Coils Coil 694 714 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 197 248 - -
Ssu5g0241 993 Coils Coil 666 686 - -
Ssu5g0241 993 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0241 Ssu-Chr5 5048395 5052606 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0241 5 5048395 5052606 Ssu5g0241 5 5048395 5052606 ECH
Ssu5g0241 5 5048395 5052606 Ssu1g3799 1 95022943 95027370 PCT