Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0240 ATGGTGAACATGGAGGAAGATGACGTGAGTGAATGGAGCACCCTTGGAGAAACAACCCACGTTAATTTTGAGAGGGTATCGCAGTTTTTCAATTGGACAGATTTATTTCCCGAATGGATAGACGAGGAGGAAGAGAGTGATGTTCCATCATGCCCCGAGATACCAATTCCAGAGTTTGCATCATACGAAGACATGGACGTAATCGTGGCCAAGTTGCCATGCAAGTACCCCGAAGAAGGGTGGGGAAGGGACGTTTTCAGGTTACAAGTTCATCTCATTGTGGCAAATTTGGTAGTGAAAAGGGGGAAGAAGGATTGGAATTGGAAAACGAAAGTGGTTTTGTGGAGCAAGTGTAGGCCAATGCTGGAGCTGTTTCGGTGCAACGATTTGGTTAAGCAGGAAGGTGAGTGGTGGTATTATGAGGCTGCTGTAAAGAGGTTGGAGCAGAAGGTTTCGCTGCCGGTGGGGTCCTGCAATTTGGCTCTGCCTCTATGGGAACAAGGGATCGACAAGGTGTACGACACGTCGAACCTGGAACAAAGCGTTCGAAGCGAAGCGAGAGCAAAACGCGAGGCCTATGCAACAGTGCTCCATTCCTCGGAGGGCTACGTTTGCGGCGCAATAACGCTAGCTCAGACCCTCCTCCAAAGCGGAACCAAACGCGACCTGGTCCTCCTCCTCGACAGCTCCATCTCCGCCGCGAAACGCCGCGCCCTGGAACTCTCCGGCTGGAAGATCCGAGTCATAACCCGGATCCGAAACCCACGCGCCGAGAACGGCACCTACAACGAGTACAACTACAGCAAGTTCCGCCTCTGGCAGCTCACGGACTACGACAAAGTGATCTTTATTGATGCCGACATCATCGTCCTCCGCAACCTCGACATCCTCTTCCACTTCCCCCAGATGTCCGTCATCGGCAACGACCAGTCCATCTTCAACTCCGGCATCATGGTCCTCGAGCCCTCCAACTGCACCTTCGACGTCCTCATGGCGCGCCGCCACGACGTCATTTCCTACAACGGtgGCGACCAGGGGTTCCTCAACGAGATATTCGTGTGGTGGCACAGGCTTCCGAGGAGGGTCAACTATCTGAAGAATTTCTGGGCCAACACGACGCTGGAGGCGAGTCTGAAGAACGCGCTGTTCGGGGCGGAGCCTCCGAAGCTGTACGCGATTCACTACCTGGGGCTGAAGCCGTGGCATTGCTACAGGGACTACGACTGCAACTGGGACGTGGAGGATCAGAGGGTGTACGCGAGTGACGTGGCGCATCGACGGTGGTGGAAGGTGCACGATGGAATGGATAAGAGGTTGCAGAGTTTGTGTAGGTTGACCAGAAAGCGAAGGATGGAGTTGAACTGGGAAAGGAGAAAGGCTGGGAAGTTGGGATTGCCAGATATGCATTGGAAGATCAATGTCACGGATCCCAGAAGATCTGGCTCGCTTTTGATGGATTAG 1461 0.5352 MVNMEEDDVSEWSTLGETTHVNFERVSQFFNWTDLFPEWIDEEEESDVPSCPEIPIPEFASYEDMDVIVAKLPCKYPEEGWGRDVFRLQVHLIVANLVVKRGKKDWNWKTKVVLWSKCRPMLELFRCNDLVKQEGEWWYYEAAVKRLEQKVSLPVGSCNLALPLWEQGIDKVYDTSNLEQSVRSEARAKREAYATVLHSSEGYVCGAITLAQTLLQSGTKRDLVLLLDSSISAAKRRALELSGWKIRVITRIRNPRAENGTYNEYNYSKFRLWQLTDYDKVIFIDADIIVLRNLDILFHFPQMSVIGNDQSIFNSGIMVLEPSNCTFDVLMARRHDVISYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTLEASLKNALFGAEPPKLYAIHYLGLKPWHCYRDYDCNWDVEDQRVYASDVAHRRWWKVHDGMDKRLQSLCRLTRKRRMELNWERRKAGKLGLPDMHWKINVTDPRRSGSLLMD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0240 486 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 480 - -
Ssu5g0240 486 Pfam Glycosyl transferase family 8 197 402 IPR002495 GO:0016757
Ssu5g0240 486 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 189 438 IPR029044 -
Ssu5g0240 486 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 1 480 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Ssu5g0240 486 SUPERFAMILY Nucleotide-diphospho-sugar transferases 191 439 IPR029044 -
Ssu5g0240 486 CDD GT8_Glycogenin 191 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0240 Ssu-Chr5 5025821 5033084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0240 1 485 Glycosyltransferase AT4G33330 69.753 0.0 724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0240 5 5025821 5033084 Ssu5g0240 5 5025821 5033084 ECH
Ssu5g0240 5 5025821 5033084 Ssu1g3800 1 95039259 95043911 PCT