Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0237 ATGCAAGCGGTGGGGAGGCTCAGCAGCTACATCACCCGCGGCGTCTACACCGTGTCGGGGCCGTTCCTCCCTTTCGGTAGCGCAGTGGACATTGTTGTCGTTCAGCAGAAGGATGGGAGCTTCAAATCCTCTCCATGGTACGTTAGATTTGGAAAATTCCAAAGGGTTTTGAAGGCAGAGGAGAAGGAAAAGGTGAAGGTCCATGTCAGTGTCAACGGTGTAGAACCTAAATTCCACATGTATTTGAACCATAAAGGGGAAGCTATTTTCCTCCATGCAGATACACAAGAACAAGGGGAATCTAAGTTTGGCAGTGAAAGCGAAACCGATGACATCACACCACAGGGTAGTGAGAGGCATGTCAAGTCCAGAAGTTATAACTTTGACTCATCAGACGAGTCAACTTCAGAAGTTGTGGGGAGGAGTAGGTCTCGGTGCTCCCGAATTCTTGGGCGTGTGTTTGGGCCAAGGTCTTTGAGAGGGGAAGGTGAAGATGCTGATACGAATGGGGTGGATATGGATTTGATGGAGCGTGCTGAGATTGCAGCCAAGTTGTTGGAGTTGAAGTGGTCTACCAATCTCACTTTTGATCAACTGCCTCCTAGGGATGGGAAGAAAACCAGGGGTGGTGCCTTGGACAATGGTTTGCCACCGCGTAAAACGAAGCCTGTGTTTAATGAGATGTTGTGCTTTGCAAGTGCAGGATGTGGAGAAGTTCGTGTCCATGCTGAGGTCTTGCATTCTGCAACTCTACTGCTACCTGAGGTTACACAAAGTGAGGAAGTCACCAAGAATTTTGACATTGGGAGGCCAGTAATGGAGGTCTCTGAATTGCATTATCAGCAAAGAGATTGTTCCCGTTCTGGTATGTGTGATGCTGGGGATGTTggaaacacaccaaaatttcgGCAATCTCAAACTGTCAATATTGGTCGAAGAGATTGTTCAGTTAAGAAGGTTAGTGCAAATACTCCAACGTCCGAACAGCTAGCATCCTTGAATCTGAGAGAAGGGAGGAACACAATAACCTTCAGTTTCTCTACAGCAAAGGGGAAGCGGCAGGTTGATGCTCAAATATATTTATGGAAATGGAACACTCGTATAGTGATATCAGATGTAGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAATTCATGCCTTTAGTAGGAATCGACTGGTCACAGACAGGCGTTGCTCATTTATTCTCAGATATCAAGGAAAATGGATACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCCTATCACACTAGACAATTTCTATGCAACCTTAAGCAGGATGGGAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCTTCTCTATATCGAGAAGTTATCCGGAGGGCTCCTCACGAGTTCAAAATTTCATGTTTGGAGAACATCAGGGCACTTTTTCCTCCTGATTGCAATCCCTTCTATGCTGGTTTTGGAAATAGGGATACGGATGAAGTCAGCTACCTTAAGGTTGGAAtcccaaaaggaaaaatattcatCATTAATCCAAGGGGAGAGATTGCTGTAAACCGTCGTTGTCTTGACACAAAATCATATACTTCTCTGCATGCTCAAGTGCATGGAATGTTCCCCCCTACAAACTCATCTGAACAGATGAATGCAGGACTGCTGGCTGTGCGGCTCCTAGAATTATATAGAGGATTTATGACAGCACAGAATACATATTGCCTGCTTCCTGCTTCGGAATTCAAACTTCTTCCTGCTCGATGGTGTGAGGGTGACATGAGAGACAGCACAACAATAGAGGATCCGTTTGGGTACTTACAATCCAATTTCAAATTCACTATCCCAGTAGAGAATGGTGAGGCTTGTGAGGATCTAGAGAATGCTCATTGTTCTACTGAGGAAGGCGAAAACGGATGGCTGAGCttacaaaagaaagaagatgaaGTTGAGGCAACCTTGGAGAGTCACATTTGA 1983 0.4418 MQAVGRLSSYITRGVYTVSGPFLPFGSAVDIVVVQQKDGSFKSSPWYVRFGKFQRVLKAEEKEKVKVHVSVNGVEPKFHMYLNHKGEAIFLHADTQEQGESKFGSESETDDITPQGSERHVKSRSYNFDSSDESTSEVVGRSRSRCSRILGRVFGPRSLRGEGEDADTNGVDMDLMERAEIAAKLLELKWSTNLTFDQLPPRDGKKTRGGALDNGLPPRKTKPVFNEMLCFASAGCGEVRVHAEVLHSATLLLPEVTQSEEVTKNFDIGRPVMEVSELHYQQRDCSRSGMCDAGDVGNTPKFRQSQTVNIGRRDCSVKKVSANTPTSEQLASLNLREGRNTITFSFSTAKGKRQVDAQIYLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSDIKENGYQLLFLSARAISQAYHTRQFLCNLKQDGKVLPDGPVVISPDGLFPSLYREVIRRAPHEFKISCLENIRALFPPDCNPFYAGFGNRDTDEVSYLKVGIPKGKIFIINPRGEIAVNRRCLDTKSYTSLHAQVHGMFPPTNSSEQMNAGLLAVRLLELYRGFMTAQNTYCLLPASEFKLLPARWCEGDMRDSTTIEDPFGYLQSNFKFTIPVENGEACEDLENAHCSTEEGENGWLSLQKKEDEVEATLESHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0237 660 MobiDBLite consensus disorder prediction 99 134 - -
Ssu5g0237 660 PANTHER LIPIN 1 196 IPR026058 -
Ssu5g0237 660 PANTHER LIPIN 304 552 IPR026058 -
Ssu5g0237 660 PANTHER GH19076P 304 552 - -
Ssu5g0237 660 SMART lns2 368 524 IPR031315 -
Ssu5g0237 660 SUPERFAMILY HAD-like 360 510 IPR036412 -
Ssu5g0237 660 Pfam LNS2 (Lipin/Ned1/Smp2) 324 545 IPR013209 -
Ssu5g0237 660 MobiDBLite consensus disorder prediction 99 127 - -
Ssu5g0237 660 MobiDBLite consensus disorder prediction 199 218 - -
Ssu5g0237 660 Pfam lipin, N-terminal conserved region 1 97 IPR007651 -
Ssu5g0237 660 PANTHER GH19076P 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0237 Ssu-Chr5 4874985 4888005 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0237 5 4874985 4888005 Ssu5g0237 5 4874985 4888005 ECH
Ssu5g0237 5 4874985 4888005 Ssu1g3803 1 95058633 95067105 PCT