Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0235 ATGGCTGCCAGGAGTGAACACCAAACCGTTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCGCACGAGAAAATTGAGAAACCTGAGATTGTTCATGGTCAAGCGTGCCAGAGCAAGAAAGGGGAGGATTTGACGCTGCTCAAGACGGAATGCCAGAGGGTGGTGGGTGATGGGGTCTCTACATATTCAGTTTTTGGGCTATTTGATGGACACAATGGATCCGCTGCTGCTATTTATGCTAAGGAGAATCttctaaataatgttttaagtgCAATTCCTTCAGATCTTAACAGAGATGAGTGGATAGCAGCATTGCCTAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAACAGAAAGCACAAAAGTCTGGAACAACTGTGACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTACTTGAATCTTCTGATGGTGGGCTTTATTACTTGTCTGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGGATCACCTCTAGTGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGgtTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATATTGGTGAATTTATCGTCCCTGTACCTTATGTAAAGCAAGTGAAGcTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGATGGTGTTTGGGATGCCCTACCTGCGGAAGTAGCCCTTGATTGTTGTCGTGGAATGTCAGCCGATGCTGCTGCATCACATATTGTTAAAGAAGCTGTACAAGCAAAAGGACTTAGAGATGACACAACCTGCATCGTTGTTGATATATTAGCTCAGGAGAAGCCTCCTGTTTCTGCGCCACAAGCAAAGAAGCCAGTAAGGGGAATGCTCAAGTCCATGTTTCGTAAAAAGTCTTCTGAATCGTCTTCTTATACTGACAAAGAGTACTTGGAGCCAGATGTAGTAGAGGAATTGTACGAGGAAGGATCTGCCATGCTTTCAGAGAGGTTAGATACTAAATACCCAGTCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTATGTCAAGTAGAGGTAAAACCTGGAGAGGGTATTTCAATACACGAGGGTGCGCCCAACTCTCGAAAATTTCGTCCCTGGGACGGACCTTTCCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCAACAGGTAGACTTAGCAGTGGAAGTGACGAATGA 1287 0.4507 MAARSEHQTVPLSVLLKRELAHEKIEKPEIVHGQACQSKKGEDLTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWIAALPRALVAGFVKTDKDFQQKAQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGGLYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRGMSADAAASHIVKEAVQAKGLRDDTTCIVVDILAQEKPPVSAPQAKKPVRGMLKSMFRKKSSESSSYTDKEYLEPDVVEELYEEGSAMLSERLDTKYPVCNMFKLFMCAVCQVEVKPGEGISIHEGAPNSRKFRPWDGPFLCSSCQEKKEAMEGKRSTGRLSSGSDE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0235 428 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Ssu5g0235 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Ssu5g0235 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Ssu5g0235 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
Ssu5g0235 428 Gene3D - 30 299 IPR036457 -
Ssu5g0235 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Ssu5g0235 428 Pfam Protein phosphatase 2C 57 277 IPR001932 -
Ssu5g0235 428 SMART PP2C_4 21 291 IPR001932 -
Ssu5g0235 428 CDD PP2Cc 62 293 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0235 Ssu-Chr5 4828437 4832943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0235 1 427 PP2C-type Phosphatase Gene Family AT1G47380 78.972 0.0 717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0235 5 4828437 4832943 Ssu5g0235 5 4828437 4832943 ECH
Ssu5g0235 5 4828437 4832943 Ssu1g3805 1 95084994 95089155 PCT