Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0228 ATGGACAACGACACAAACACAACAACCACCCCAGCAGTAGCACACGATTTCCCCGGCCTCATACGCGTCTTCACCGATGGTCGTGTCCAGCGGTTCACAGGAACCGGCGTGGTTCCACCCTCCACCACTCATCCCGTTTCATCCAAAGACATCACTCTCCACCCTCATTCCACCCTCTCCGCTCGCCTCTTCCTCCCATTGCAAcaaaccaccaccaccaccaaccacCGCAACAACCTCCCTCTCTTAGTCTACTTCCACGGTGGCGGCTTCTGCGCCTCCTCCCCCTTCACGGGAAACTACCACAACTATGTCACCGCAGTCGTGGCTGAAGCCAAAGTCGTTGCTGTCTCTGTCGACTACAGGTTAGCACCGGAACACCCTATTCCAGCAGCATATGAGGACTCTTGGGCTGCACTACAGTGGGTTGCGTCACACCGGAATAGCACTGGACCTGAGCCTTGGTTAAATGACTATGTAGACTTTGGAAGAGTCTTCTTGGCTGGGGACAGTGCTGGTGCTAACATAGTACATAACATAACTATGCTCCTTGGAGACCCgGCTTGGGACATTGGCATGGACATTTTGGGAGTTTGTCTAGTCCACCCATATTTTTGGGGTTCAGTTCGGGTCGGATCTGAGGCGTTGGATCCGGATAGGAAGGCGGTGGTGGACCGGTTGTGGCCGTTCGTGTGTCCGGAGACGCCGGACAACGATGACCCGCGGGTTAACCAGGTGGGGGAGGGTGCACTCAGCTTGGCGGGGCTGGGTTGTGGGAGGGTGCTGGTGTGTGTGGCGGAGAAGGATGTGCTGAGGGACAGAGGCTGGCTTTACTATAATGCATTGAGTCGGAGCGGGTGGATGGGGGTGGTGGAAATTGAGGAGACTCAGGGGGAGGGTCATGCGTTTCATCTTTATGATTTGGAAAGTAACAAGGCTCAGGATTTGATCAAATGCCTGGCTGACTTCTTCAACAGAGACCCGCCTCCTTCAATTTAA 999 0.5335 MDNDTNTTTTPAVAHDFPGLIRVFTDGRVQRFTGTGVVPPSTTHPVSSKDITLHPHSTLSARLFLPLQQTTTTTNHRNNLPLLVYFHGGGFCASSPFTGNYHNYVTAVVAEAKVVAVSVDYRLAPEHPIPAAYEDSWAALQWVASHRNSTGPEPWLNDYVDFGRVFLAGDSAGANIVHNITMLLGDPAWDIGMDILGVCLVHPYFWGSVRVGSEALDPDRKAVVDRLWPFVCPETPDNDDPRVNQVGEGALSLAGLGCGRVLVCVAEKDVLRDRGWLYYNALSRSGWMGVVEIEETQGEGHAFHLYDLESNKAQDLIKCLADFFNRDPPPSI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0228 332 Pfam alpha/beta hydrolase fold 83 304 IPR013094 GO:0016787
Ssu5g0228 332 PANTHER ARYLACETAMIDE DEACETYLASE 11 325 - -
Ssu5g0228 332 PANTHER CARBOXYLESTERASE 2-RELATED 11 325 - -
Ssu5g0228 332 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 83 99 IPR002168 GO:0016787
Ssu5g0228 332 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 165 177 IPR033140 -
Ssu5g0228 332 SUPERFAMILY alpha/beta-Hydrolases 21 326 IPR029058 -
Ssu5g0228 332 Gene3D alpha/beta hydrolase 25 326 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0228 Ssu-Chr5 4779408 4780548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0228 13 327 Carbohydrate Esterase AT3G48700 45.679 6.80e-96 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0228 5 4779408 4780548 Ssu1g3811 1 95169850 95170797 PCT