Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0227 ATGTCGGGCATGGAGAGACTTCAAAGGATGTTTGCGGGTGCAGGAGGAGCGCTGGGCCATCCCCCACCGGATTCCCCCACCCTGGATTCCTCGGAGCAGGTTTACATCTCCTCCCTCGCGCTTCTCAAAATGCTCAAACACGGAAGAGCCGGTGTACCCATGGAAGTGATGGGTTTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTCTTCGCTATGCCTCAGAGTGGGACAGGTGTTAGCGTTGAAGCAGTTGATCATGTTTTTCAGACTAATATGCTCGATATGTTGAAGCAGACTGGGAGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGACATTAATACACAACAGAGTTTTGAGGCTTTAAACCAACGGGCAGTTGCTGTGGTGGTGGATCCCATTCAGAGTGTTAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAGGAACCACGACAGACAACTTCCAACCTGGGCCATCTAAACAAGCCATCTATCCAAGCTCTGATTCATGGCTTGAATAGACATTATTACTCCATAGCAATTAATTACAGAAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCACAAGAAGAAATGGACTGATGGTTTGACACTCAGGCGTTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAATTTAGCAGCCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAGCTGCCACCAGAAAAACTGGCAATTGCAAATGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCTTCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTTTTCTAG 939 0.4675 MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLNLAAKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0227 312 ProSiteProfiles MPN domain profile. 34 169 IPR037518 -
Ssu5g0227 312 SMART pad1_6 33 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu5g0227 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu5g0227 312 Gene3D Cytidine Deaminase, domain 2 20 237 - -
Ssu5g0227 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 312 - -
Ssu5g0227 312 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 HOMOLOG 3 312 IPR035299 GO:0008237|GO:0061578
Ssu5g0227 312 CDD MPN_RPN11_CSN5 23 289 - -
Ssu5g0227 312 SUPERFAMILY JAB1/MPN domain 34 171 - -
Ssu5g0227 312 Pfam Maintenance of mitochondrial structure and function 176 299 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0227 Ssu-Chr5 4772469 4778763 Dispersed