Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0213 ATGCAGCAATCGAACGGTTCCGATTCGTCGCAACCGCAGCAGCAGCAGTCGTCGGAGCAGAACGCGCCGCGGCAGCCGCAGCAGTGGGTGCCGATGCCGTACCCGGCGGCGATGGTAATGCAGCACCACATGTTGCCGCCTCAGCATTACGCGCCTCCGCCGTACGTGCctttccaccaccaccaccaccagtaCCAGCCGCACGTGCCGCACCAGCACCAGCAGCACCAGAACGGATCCGCCGGCGAGAACAAAACCATCTGGATCGGCGATTTGCATCACTGGATGGACGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGagaTTTCCTCCATGAAGGTTATTCGCAATAAGCAAACAGGTCTATCAGAGGGTTATGGATTTGTGGAGTTCTACTCACACGCAACAGCTGAGAAAGTTTTGCAGAATTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTTAGGTTTGGAGATGACAATGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCGACTCCAAGGAAATCATCAGGCCATCAGCAGGGAGGCCAGTCAAATGGCACATCCGGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAATGATTGGCAAGCAAACGGTCCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATATATGATGGTTATGGATACGCGTTACCCCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCCCTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1242 0.4823 MQQSNGSDSSQPQQQQSSEQNAPRQPQQWVPMPYPAAMVMQHHMLPPQHYAPPPYVPFHHHHHQYQPHVPHQHQQHQNGSAGENKTIWIGDLHHWMDENYLHRCFASTGEISSMKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSGQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0213 413 MobiDBLite consensus disorder prediction 60 81 - -
Ssu5g0213 413 Gene3D - 84 164 IPR012677 -
Ssu5g0213 413 SUPERFAMILY RNA-binding domain, RBD 51 166 IPR035979 GO:0003676
Ssu5g0213 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 355 IPR000504 GO:0003723
Ssu5g0213 413 MobiDBLite consensus disorder prediction 258 289 - -
Ssu5g0213 413 CDD RRM3_NGR1_NAM8_like 282 353 - -
Ssu5g0213 413 Gene3D - 166 276 IPR012677 -
Ssu5g0213 413 Gene3D - 277 383 IPR012677 -
Ssu5g0213 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Ssu5g0213 413 MobiDBLite consensus disorder prediction 253 290 - -
Ssu5g0213 413 CDD RRM2_SECp43_like 177 256 - -
Ssu5g0213 413 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 21 412 - -
Ssu5g0213 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 21 412 - -
Ssu5g0213 413 CDD RRM1_SECp43_like 86 166 - -
Ssu5g0213 413 SMART rrm1_1 284 351 IPR000504 GO:0003723
Ssu5g0213 413 SMART rrm1_1 86 161 IPR000504 GO:0003723
Ssu5g0213 413 SMART rrm1_1 179 253 IPR000504 GO:0003723
Ssu5g0213 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 249 IPR000504 GO:0003723
Ssu5g0213 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 348 IPR000504 GO:0003723
Ssu5g0213 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 154 IPR000504 GO:0003723
Ssu5g0213 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
Ssu5g0213 413 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g0213 413 SUPERFAMILY RNA-binding domain, RBD 177 356 IPR035979 GO:0003676
Ssu5g0213 413 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0213 Ssu-Chr5 4480932 4484978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0213 87 363 Eukaryotic Initiation Factors Gene Family AT4G34110 28.723 3.75e-31 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0213 5 4480932 4484978 Ssu1g3817 1 95235765 95237545 PCT