Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0211 ATGATGCAGGGAAGCTTGAGAAATGCAAATAAAAGTGGAAAAGCCTCtagcagagaaagaaaattggCATTGCAACAAGATGTGGATAGGTTGAAGAAGAATCTTAGACATGAGGAGAACATTCATAGAGCATTGGAGAGGGCTTTCAACAGACCTTTGGGAGCTTTGCCTCGTCTTCCTCCTTATCTTCCTCCCTATATACTAGCTCTTCTGGCTGAAGTGGCAGTTCTGGAAGAGGAAATTGTTAGGCTTGAGGAGAAGGTTGTGCATTTCAGACAGGATTTGTACCAGGAAGCTGTCTACATGTCATCTTCCATGAGGAAACTGGAACATTCAGTTTCAGCTCCTCCAAACAAGTCAAACCCAACAATGGATAGTCCCAAGTTGGATAAATTGAAGTCCCAATCCCAAACAGCTGGTAATCCAGAAGCAACATCTGCAGCTAGGCCTACCCCAACACTCACTGAGGATAGACAAGGGAAAGAGAATCAATCCTGTAGTAATTCTTCTAAGAGCAGGCAGCAAGCCTCCAACCAAATGAACAaaactccaactaaaaaacttGACAATAAATCATTGCAGAAAAGGTGGGATCATCCAAAAAGAAAGCAAGAACCAGGGGTGAACAACAAGCAAATTGCAGATGTAAGAAATCGTAGTCCACATACAAATTCACCAGAAACTGAGAGTCCAAATATAATTTCAGAAAATATTCTAAAGTGCTTATCAAACATTCTCTTGAGAATGAGTGCTGTGAAGAATCCAGGTTCTGCAGGTGACATACCACCACACTTGTGGGATCTAAAACCTCAAAACTGTGATGAAGGAACAGAGTTTGGGGATCCATATGGCATCTGTTTGGAATTTGGGAAGAGGGATATTGGTCCATATCAGCAATTATGTGCAATTGATGCTAAATCCTTCAACCCAAAACGAACTGCAAAAACTTTGTTTTTACTACATCGGTTGAAACTTCTTTTTAGGAAACTAGCCTCTGTTAACTTAGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAACTCGTGTATGATGAATGCATTCATAGAGAATGGCATACCAGAGAGTCCTGAAATGGCTGTTGCACTTATGCGGAAGGCAACAATAAATGTGGGTGGACACGTGCTAAGTGCAACAACCATAGAACATTTCATTTTAAGACTTCCTTATCACTGGAGATTTACGTTTTCCAAGGGAACAAAAAATCATGAAATGACAGCAAGAAGCATATATGGACTGGAACTGTCAGAACCCCTAGTGACATTTGCTCTCTCTTGTGGAACTTGGTCTTCTCCTGCTGTGAGAGTTTACACAGCATCCCAGGTTGAGAATGAACTGGAAGTGGCCAAAAGGGAGTACTTACAGGCAGCAGTTGGAATTTCAACTTCAAAGTTTGCTATCCCAAAGCTGCTCGATTGGTATTTACTGAACTTTGCAAAAGACTTGGAATCATTGCTGGATTGGATCTGCCTCCAGTTACCAAGTGAACTGGGGAAAGAAGCCATTAAATTCCTTGAGGAAAGAAAAACCGAACCGCTCTCACAATTTGTACAAATTAGGCCATATGAGTTCAGCTTTAGATACTTGATATGCACATAA 1632 0.4044 MMQGSLRNANKSGKASSRERKLALQQDVDRLKKNLRHEENIHRALERAFNRPLGALPRLPPYLPPYILALLAEVAVLEEEIVRLEEKVVHFRQDLYQEAVYMSSSMRKLEHSVSAPPNKSNPTMDSPKLDKLKSQSQTAGNPEATSAARPTPTLTEDRQGKENQSCSNSSKSRQQASNQMNKTPTKKLDNKSLQKRWDHPKRKQEPGVNNKQIADVRNRSPHTNSPETESPNIISENILKCLSNILLRMSAVKNPGSAGDIPPHLWDLKPQNCDEGTEFGDPYGICLEFGKRDIGPYQQLCAIDAKSFNPKRTAKTLFLLHRLKLLFRKLASVNLENLNHQEKLAFWINIYNSCMMNAFIENGIPESPEMAVALMRKATINVGGHVLSATTIEHFILRLPYHWRFTFSKGTKNHEMTARSIYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREYLQAAVGISTSKFAIPKLLDWYLLNFAKDLESLLDWICLQLPSELGKEAIKFLEERKTEPLSQFVQIRPYEFSFRYLICT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0211 543 Pfam Leucine-zipper of ternary complex factor MIP1 17 98 IPR025757 -
Ssu5g0211 543 MobiDBLite consensus disorder prediction 211 232 - -
Ssu5g0211 543 MobiDBLite consensus disorder prediction 110 232 - -
Ssu5g0211 543 MobiDBLite consensus disorder prediction 188 208 - -
Ssu5g0211 543 Pfam Protein of unknown function, DUF547 336 465 IPR006869 -
Ssu5g0211 543 PANTHER EXPRESSED PROTEIN 3 542 - -
Ssu5g0211 543 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g0211 543 Coils Coil 14 48 - -
Ssu5g0211 543 Coils Coil 67 94 - -
Ssu5g0211 543 PANTHER TRANSCRIPTION FACTOR 3 542 - -
Ssu5g0211 543 MobiDBLite consensus disorder prediction 110 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0211 Ssu-Chr5 4446624 4449668 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0211 5 4446624 4449668 Ssu5g0211 5 4446624 4449668 ECH