Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0206 atgggGGGAAATACAATGGAAGCAACGAAAAGAtactcttcctcctcctcttcttcgTACTCTTCCGCTTCGGAGTCCACCCCACGAagcgaaaataaaaatacttgttaCAAAATACAAGGCCCATGGAGCGCGGAAGAGGATCGGATCCTGACCCAGCTCGTGGAAACCCATGGGCCGCGAAACTGGGCCTTGATAAGCCGTTACATAAAGGGGAGGTCCGGGAAGTCGTGCAGGCTTCGGTGGTGTAACCAACTGAGTCCCGCGGTGGAGCACCGACCCTTCTCCACGCGCGAGGACGAGGTTATCCTGCACGCGCATGCGCGGTTCGGGAGCAAGTGGGCCACCATTGCGAGGTTGCTGCCGGGCCGAACCGACAATGCCGTTAAGAACCACTGGAACGCCACGCTCAAGCGGAGGGCCTGCCAACGGCGTCGTTTTGATGCTGACAGGGATACGTCGTTGGGGTTGGAGGATGACCCCTTGACCGCGTTGACTCTGGTCCCGCCGGGCTGTGCttgcggcggcggcggcggcggcggcgaggAGGATGAGCGGCGAGGAGTTTCGCCGGTGGGGTTTTGGGATGCGATGCGAGATGTGGTTGCTAGGGAAGTGAGAGAGTATATGTCTGCCTCCTTTTCCGACAACTTGGGCTTTGATGAGGAATTATCGAAATGA 681 0.514 MGGNTMEATKRYSSSSSSSYSSASESTPRSENKNTCYKIQGPWSAEEDRILTQLVETHGPRNWALISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSTREDEVILHAHARFGSKWATIARLLPGRTDNAVKNHWNATLKRRACQRRRFDADRDTSLGLEDDPLTALTLVPPGCACGGGGGGGEEDERRGVSPVGFWDAMRDVVAREVREYMSASFSDNLGFDEELSK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0206 226 SMART sant 91 139 IPR001005 -
Ssu5g0206 226 SMART sant 39 88 IPR001005 -
Ssu5g0206 226 PANTHER MYB PROTEIN-RELATED 6 206 - -
Ssu5g0206 226 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Ssu5g0206 226 CDD SANT 42 84 IPR001005 -
Ssu5g0206 226 ProSiteProfiles Myb-like domain profile. 40 86 IPR001005 -
Ssu5g0206 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 141 IPR017930 -
Ssu5g0206 226 Gene3D - 40 91 - -
Ssu5g0206 226 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Ssu5g0206 226 MobiDBLite consensus disorder prediction 1 36 - -
Ssu5g0206 226 Gene3D - 93 154 - -
Ssu5g0206 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 90 IPR017930 -
Ssu5g0206 226 CDD SANT 94 137 IPR001005 -
Ssu5g0206 226 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 6 206 - -
Ssu5g0206 226 Pfam Myb-like DNA-binding domain 94 134 IPR001005 -
Ssu5g0206 226 Pfam Myb-like DNA-binding domain 41 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0206 Ssu-Chr5 4333164 4333844 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g0206 Myb_DNA-binding 9.8e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0206 5 4333164 4333844 Ssu5g0206 5 4333164 4333844 ECH
Ssu5g0206 5 4333164 4333844 Ssu1g3828 1 95454209 95454886 PCT