Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0205 ATGCCTCTTTCTCGCAAACCACTTTCTCCGTCGCCGTCGACCGGAACCAAGCAGATCGACGGCGGAGGCAGAGCCGGTGATTTTGTTCTAGCGCGGCGGTTGACCAGGCAGAGGAAGCTCCGGCACCTCAGCGACCAAGACATTGGCCTCTTCCACTCCGATGAGTTTCCTTCTTTCGCGGGTTCGCTGGAGTCTCGCCCCCACGGCGGTGCCAACCGCCGGTCGTTCTCTGCTCAGCCGCAACCGCTGCCGCTTCCCGAGTCGCCGTTGACCCGTCGAGCCAAGTCAATCAACTGCTGTTCCGTAGATCCTCACCTCTCATCATCGTTAGAACAACATGGCTTTGCTGTTTCGAGGAACACAGCGTATCATGATGCAGTGACAGTGACAGTGACACGTAAAAAACCTACACTTAATTTGGATAAATCCTCCTTGGATTTAACTCTTGCAAATGCAAAATACAATCTGAGAGAGCATATCCCTGCAGCAAGTTTCTTAACAGGTGATGTCTTTGTCCACTGTTGTTTTATGCCTCGAGAATTGAATATTGAACATCCTTTACCCTCTTATGTTGCTGTTGTTAACGCAGGCAATAGTTCATGGAAAAACCGCAGAGCAGTGTCTCATGGTGATGACTCTGAAGGTAATTCCCACTTGAATTTGGGTGTTGCTGCCAAACCCAAGAGTGCCCCAACAAGTGTAGTCACTAGTCCTGATACTAGTCCACATAGATCAAGCAATGTAGATTTCTTTGATCCTACCACCAACTTCTCTCTGGAAGTTAATgacaaattgaaaatgttatcAGCTAAAACTGTTCATAGTCCAGACCATTCTCCTCTTCATTGCCCTCTAAGCCTCGGTCATTACTTCAATCCTAAAATTGAGGAGGGATCTCAGCACCATAAATCTTTGTCCAGGGTGTGCCCTGAAAATAACCTTGTTGATGCACATCCCTTACCCCTTCCTCCTAGAGCTTCATCACCAACACAATTATCTATGTTGCATCAATCAAATACCATGCATCATGCTACTGAAAATCTGCCTTCAGTGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGAGGAACCTTTGGAAGTGTTTTTCATGCAACCAACCTAGAAACTGGAGCCTCGTGTGCGATGAAGGAGGTCAATTTAATTCCTGATGATCCAACATCCGCCGAATGCATGAAACAACTGGAGCAGGAAATCAAAATTCTCGGTCAACTACACCACCCCAACATTGTGCAGTATTATGGAAGTGAAATAGTTGGCAATcatttgtacatatatatggAGTATGTCCACCCAGGATCAATTAGGAAATTTATGCGTGAACATTGTGGAGCTATGACCGAATCTGTCGTTCGCAATTTTACAAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAACGAATCAGGCATTGTCAAGCTTGCAGATTTTGGGCTGGCGaaaattCTGATGGGGAATTCATATGATCTTTCTTTAAAGGGTAGTCCTTATTGGATGGCTCCAGAGGTGGTGAAAGGTGTAAAGAATGAATCCAATCCTGATGTTGTCATGGCCATTGATATATGGAGCTTAGGTTGCACCATCATAGAAATGTTGACAGGCAAAGCTCCTTGGAGTGAAATTGAAGGGCCTTCAGCCATGTTCAAGGTACTGCAGGAGTCCCCACCTATACCTGAAAATTTATCTTCAGTGGGGAAGGATTTCCTCCAGCAATGTTTCCAAAGGGACCCTGCAGATCGACCATCCGCCGCAAAGCTTCTTAAGCATCCCTTTGTGCAGAATTTGCATGATCAAGATGTTCTAGTCTATCCACAATCCTATCCTAGAGGAGACCTAGTACCAGGAGGTAATTCAGCTAGTCCTAGAGAAACTTCCATAAATAGACGTGGCATAATGCAAGCCTCCATTAGCACACggatttttaacaaaattcagAAATTAATCGGTGATACTTCCGAACAAAGCAATGCTAAGGAgtctaattatattatatctacTCATCGCTCTCATGTTCCAGAAGTGAACATTATTCAGTCTTCATTGAAACCCGGTACCCTCAATTACATGTCTGTTGCAAATTCCAGAAACATTTCCACCGTCATGAGAATGATCACGAACTTTTGA 2193 0.4359 MPLSRKPLSPSPSTGTKQIDGGGRAGDFVLARRLTRQRKLRHLSDQDIGLFHSDEFPSFAGSLESRPHGGANRRSFSAQPQPLPLPESPLTRRAKSINCCSVDPHLSSSLEQHGFAVSRNTAYHDAVTVTVTRKKPTLNLDKSSLDLTLANAKYNLREHIPAASFLTGDVFVHCCFMPRELNIEHPLPSYVAVVNAGNSSWKNRRAVSHGDDSEGNSHLNLGVAAKPKSAPTSVVTSPDTSPHRSSNVDFFDPTTNFSLEVNDKLKMLSAKTVHSPDHSPLHCPLSLGHYFNPKIEEGSQHHKSLSRVCPENNLVDAHPLPLPPRASSPTQLSMLHQSNTMHHATENLPSVKGQWQKGKLIGRGTFGSVFHATNLETGASCAMKEVNLIPDDPTSAECMKQLEQEIKILGQLHHPNIVQYYGSEIVGNHLYIYMEYVHPGSIRKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNESGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGVKNESNPDVVMAIDIWSLGCTIIEMLTGKAPWSEIEGPSAMFKVLQESPPIPENLSSVGKDFLQQCFQRDPADRPSAAKLLKHPFVQNLHDQDVLVYPQSYPRGDLVPGGNSASPRETSINRRGIMQASISTRIFNKIQKLIGDTSEQSNAKESNYIISTHRSHVPEVNIIQSSLKPGTLNYMSVANSRNISTVMRMITNF 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0205 730 Pfam Protein kinase domain 356 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0205 730 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 10 726 - -
Ssu5g0205 730 SUPERFAMILY Protein kinase-like (PK-like) 336 640 IPR011009 -
Ssu5g0205 730 MobiDBLite consensus disorder prediction 1 25 - -
Ssu5g0205 730 SMART serkin_6 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0205 730 MobiDBLite consensus disorder prediction 205 248 - -
Ssu5g0205 730 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 10 726 - -
Ssu5g0205 730 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Ssu5g0205 730 MobiDBLite consensus disorder prediction 230 248 - -
Ssu5g0205 730 Gene3D Transferase(Phosphotransferase) domain 1 345 691 - -
Ssu5g0205 730 MobiDBLite consensus disorder prediction 61 89 - -
Ssu5g0205 730 ProSiteProfiles Protein kinase domain profile. 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0205 Ssu-Chr5 4319774 4328886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0205 229 617 MAP Kinase Kinase Kinase AT5G66850 54.225 4.87e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu5g0205 Pkinase 6.9e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0205 5 4319774 4328886 Ssu1g3833 1 95523422 95529550 PCT