Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0203 ATGGCCCTGAATGACTTTTTCGCGGGGGAGATCGCGACGGAGCTTCTGAAAATGCTCATAAACATCTCCCGCAAGTCCCTTCTGTGCCGCTCGAGCGCCGACCAACTCATCAGCTACATCCAGGAGCTCCTCCCGACCATCGAGGAGATCAAGTACTCCGGCGTCGAGCTCCCGGCGCCGCGCCAGTCCCAGCTCGACCGCCTCTCGGAAATCCTCCGCTCCGGCGTCGAGCTCTCCCACAAGGTCCTCGCCTCCGGCCGCTGGAACGTCTACCGCAACCTCCAACTCGCCAAGAAGATGGAGAAGCTCGAGAAGAACGTCTCCAAGTTCATGCTGGGCCCCATGCAGGCCCATATCATGGCCGACGTCCACCACGTCCGGTTCGAGATGGCGGAGCGCTTCGACCGGGTTGATAACTCCTTCCGCCGCCTCGAGCAGTACTTCGGGAACATGAAGATCGGTGTCGGCGGCGGAGGGTGGGTGGAGGAGGCCGTCAGGAGCGTCGACCACCATGTTGACAGTGCTTCCCCTGTTGGTTTGGCTTTCGGGAAAAATAAGGTTAAGGGGATGGTTGTCGGGAGAGAGGATCTTTGGGTTGTCGGGATTTCTGGGATTGGTGGGTCCGGGAAGACCACTCTCGCCAGAGAGGTCTGCAGAGACGATCAAGTTAGATgttATTATAGGGAAAGgattttgtttctgactgtgtCGCAGTCTCCGAATGTGGAGCATCTAAGGACGAAGATTTGGGGGTATATTATGGGGAACGAGAGGTTGGATGCGAATTATGTGGTTCCACAGTGGACGCCGCAGTTTGAGTTCAGAAGCGAGGTGCGAACTCTGATTGTTTTGGATGATGTGTGGTCACTCTCCGTGCTGGAGCAGCTTGTGTGTAGAATACCCGGTTGCAAGTTCCTTGTGGTGTCCAGGTTTAAATTCCCGGTGTTAAGTGCTTCTTATGAAGTGGAATTGCTGAGTGATGAGGATGCCCTGTCTTTGTTCTGTCACCATGCTTTTGGGCAGAAATCAATTCCTTTAGCTGCTACTGAGAATTTGGTCAAGCAGGTTGTGACCGAGTGTGGAAGGCTTCCTTTGGCTCTTAAGGTGATTGGAGCTTCTTTGCGAGATCAGACTGAGATGTTTTGGTTGAGTGTTAAAAACAGGCTATCTCAAGGCCAAAGTATTGGGGAATCCCATGAAATCAATCTGATTGAAAGAATGGCAATTAGTATTAATTACCTTCCAGAGAAGATCAAGGAGTGCTTCTTGGACTTGTGTTCATTTCCTGAGGATAAAAAAATTCCTCTGGATGTTCTCATAAACATGTGGGTGGAAATCCATGACATTCCTGAAACAGAAGCTTATGCTATTGTGGTTGAGCTCTCCAACAAGAATCTTCTCACCTTAATGAAAGAGGCACATGCCGGAGGCATGTATAGCAGTTGCTTTGAGATCTCAGTTACTCAACATGATGTACTGAGAGACATGGCCCTTAATTTGAGCAACCGTGCTAGCATTAATGAACGCCGGCGATTGGTTATGCCAAAACGAGAGAATGGAATGCCTAAAGAGTGGTTGAGATACAAGCACAGACCATTTGAGGCTCAGATTGTTTCAATTCACACAGGCGAAATGAAGGAATTAGACTGGTGTAATCTGGAATTTCCAATGGCTGAAGTGCTGATTATTAATTTCACATCCACTGAGTACTTCTTACCTCCCTTCATTAATAGAATGCCAAATTTGAGggcattgataataataaactacAGTGCTACATATGCTTGCCTTCACAATGTTTcagtttttaagaatttgtccACCTTGAGGAGCCTCTGGCTTGAAAAAGTTTTCACCCCAGAGTTATCAGGCATTGTCTTGGAAAACTTGGGGAAATTGTTTATTGTCCTGTGCAAGATTAGTAACAGTTTGGAGGGGAAAGAAGCAGACCTGGCCCAAGTCTTCCCTAACCTCTTTGAGCTCACTCTTGATCACTGTGATGATCTAACTCAACTTCCCTCAAGCATTTGTGGAATGAAGTCACTCAAAAACTTGAGTCTCACCAACTGCCACTATTTGACTCAATTGCCTGTTGAATTAGGTAAACTAAGATCTCTGGAGATCCTCCGTTTATATGCTTGTCCCGATCTGAAAACACTTCCTCCCAGCATCTGTGACATACTAAGGTTGAAGTATATTGACATTTCTCAATGTGTTAACCTGACATGCTTCCCTGAAGAGATTGGTAGATTAGTAAGCTTAGAGAAGGTTGACATGAGGGAATGCTCCATGATTAGAAATGTACCAAAGTCTGCATTGTCACTGCAGTCTCTCCGGCTTGTAATTTGTGACGAGGAGGTATCTGGGATTTGGAAAGATGTGGAGAAGGCCAAGCCTAATGTGCATATTCAAGTATCAGAGCAGTCCTACAATTTGGACTGGCTTAAAGAGTGA 2454 0.4645 MALNDFFAGEIATELLKMLINISRKSLLCRSSADQLISYIQELLPTIEEIKYSGVELPAPRQSQLDRLSEILRSGVELSHKVLASGRWNVYRNLQLAKKMEKLEKNVSKFMLGPMQAHIMADVHHVRFEMAERFDRVDNSFRRLEQYFGNMKIGVGGGGWVEEAVRSVDHHVDSASPVGLAFGKNKVKGMVVGREDLWVVGISGIGGSGKTTLAREVCRDDQVRCYYRERILFLTVSQSPNVEHLRTKIWGYIMGNERLDANYVVPQWTPQFEFRSEVRTLIVLDDVWSLSVLEQLVCRIPGCKFLVVSRFKFPVLSASYEVELLSDEDALSLFCHHAFGQKSIPLAATENLVKQVVTECGRLPLALKVIGASLRDQTEMFWLSVKNRLSQGQSIGESHEINLIERMAISINYLPEKIKECFLDLCSFPEDKKIPLDVLINMWVEIHDIPETEAYAIVVELSNKNLLTLMKEAHAGGMYSSCFEISVTQHDVLRDMALNLSNRASINERRRLVMPKRENGMPKEWLRYKHRPFEAQIVSIHTGEMKELDWCNLEFPMAEVLIINFTSTEYFLPPFINRMPNLRALIIINYSATYACLHNVSVFKNLSTLRSLWLEKVFTPELSGIVLENLGKLFIVLCKISNSLEGKEADLAQVFPNLFELTLDHCDDLTQLPSSICGMKSLKNLSLTNCHYLTQLPVELGKLRSLEILRLYACPDLKTLPPSICDILRLKYIDISQCVNLTCFPEEIGRLVSLEKVDMRECSMIRNVPKSALSLQSLRLVICDEEVSGIWKDVEKAKPNVHIQVSEQSYNLDWLKE 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0203 817 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Ssu5g0203 817 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 814 IPR044974 GO:0006952
Ssu5g0203 817 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 3 814 - -
Ssu5g0203 817 Pfam NB-ARC domain 185 403 IPR002182 GO:0043531
Ssu5g0203 817 Gene3D - 407 497 IPR036388 -
Ssu5g0203 817 SUPERFAMILY L domain-like 560 781 - -
Ssu5g0203 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 425 IPR027417 -
Ssu5g0203 817 Gene3D - 172 317 IPR027417 -
Ssu5g0203 817 Gene3D - 324 406 IPR042197 -
Ssu5g0203 817 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 135 IPR008808 -
Ssu5g0203 817 Gene3D Ribonuclease Inhibitor 503 801 IPR032675 -
Ssu5g0203 817 PRINTS Disease resistance protein signature 677 693 - -
Ssu5g0203 817 PRINTS Disease resistance protein signature 360 374 - -
Ssu5g0203 817 PRINTS Disease resistance protein signature 274 288 - -
Ssu5g0203 817 PRINTS Disease resistance protein signature 199 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0203 Ssu-Chr5 4279599 4282784 Proximal