Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0197 ATGGGGTGTGACTGTGGTGGAAAGTTAAATGTGAGAACGCCTCATTTCTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCAGATGGATTTGTCTGTCACATGGAGGGTAGGACGTATGAATCAGTTTCCTTAACTGGTCCTAGTGGAAACGTGTGGACAGTGCAATTGATTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGGCATTTGTGGTAGATCATCGACTAGAATGTGGTGAGCTTTTGGTTTTCAGATACGAGGGTCACTTGCATTTTACCGTGCAAGTATTTGATAAGTATGCGTGTGAGAAAGAAGCAGCGTTTCTTTCTGAATGCAGTCAAAATTCATGTGACTTTGATAATATTAAAGGACAGAAAAGAGATACAAGGGAGAATTCTTCTTTGGATATTGTTGTTGAAGGTGTTCCAAAGAAAATGAGAGGTAGTACCAATGAGAAGCAGGAACTTGAGCTGGGTATTGTTGGTAAAGAACTATCCCAGTATGAGGTAGTTAGACCAATTAGTATGTTCAGAGAAAACGAAGAAACATTCAAAGCATGTTCAGCTAATGAAGATGAAGAGGCTGCCATCCTGTATAGAAGTGGGAAGGAAGATGATCATTATATTCTCAGTGGAGTTTCATTATCAAATGTATCAGCACAGGATGAGAAAAAAGTAGCTCAgtcattttcttcctcttttccaTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATACCAGTTTTCAATGGCACATCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACCAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATAAAGGTTGGAGATATCTGTATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGGCTGGAAAGCCAGGTCGGAAAGGTAGCCATTAGTAGTAGGCCTAGTGCAGGACATGCTATAACTTCCAGATATATGCCAATGAATCCTAAAGTCAGCTCAAAATGCATAAGAAAAGTTGATCTATCGGATAAAAAGTGGTCAAAGATTGGTCAAGAAACTGTTTTGTCCATTGACCTAAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGGCTTTCCCCTCAGTCGAAAGCTGCCCATAAAAAGTTGGGTGTTCAGAGGAAACATCGTGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCAAGTTTTGTGAAAATCATGAAAAAGTTCAATGTCAGCGGATCATACACTTTGAAAATTCCCTACCAGTTCTCTGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAAAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTCGTTGCTCAATGTGAGATGCAGGTTTACATAACTGGGGTTGGAAAGGAAGGGGTTGACCATCGAAATGagaatttaaaacttaatagattAGTTAACGTTCCATCTACCTGCTAA 1770 0.391 MGCDCGGKLNVRTPHFYEVYSSAFSSHRLKIPDGFVCHMEGRTYESVSLTGPSGNVWTVQLIKQDNDLFFHHGWSAFVVDHRLECGELLVFRYEGHLHFTVQVFDKYACEKEAAFLSECSQNSCDFDNIKGQKRDTRENSSLDIVVEGVPKKMRGSTNEKQELELGIVGKELSQYEVVRPISMFRENEETFKACSANEDEEAAILYRSGKEDDHYILSGVSLSNVSAQDEKKVAQSFSSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVHIAGVGKDGLESQVGKVAISSRPSAGHAITSRYMPMNPKVSSKCIRKVDLSDKKWSKIGQETVLSIDLKKSGRASNTSKKMGLSPQSKAAHKKLGVQRKHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSKGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYITGVGKEGVDHRNENLKLNRLVNVPSTC 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0197 589 CDD B3_DNA 242 336 IPR003340 GO:0003677
Ssu5g0197 589 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Ssu5g0197 589 MobiDBLite consensus disorder prediction 407 436 - -
Ssu5g0197 589 SUPERFAMILY DNA-binding pseudobarrel domain 463 564 IPR015300 -
Ssu5g0197 589 CDD B3_DNA 468 562 IPR003340 GO:0003677
Ssu5g0197 589 ProSiteProfiles B3 DNA-binding domain profile. 244 340 IPR003340 GO:0003677
Ssu5g0197 589 PANTHER B3 DOMAIN-CONTAINING 445 582 - -
Ssu5g0197 589 CDD B3_DNA 21 105 IPR003340 GO:0003677
Ssu5g0197 589 SMART B3_2 470 568 IPR003340 GO:0003677
Ssu5g0197 589 SMART B3_2 244 342 IPR003340 GO:0003677
Ssu5g0197 589 SMART B3_2 16 107 IPR003340 GO:0003677
Ssu5g0197 589 Gene3D - 8 109 IPR015300 -
Ssu5g0197 589 Pfam B3 DNA binding domain 244 336 IPR003340 GO:0003677
Ssu5g0197 589 Pfam B3 DNA binding domain 470 557 IPR003340 GO:0003677
Ssu5g0197 589 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Ssu5g0197 589 PANTHER B3 DOMAIN-CONTAINING 1 444 - -
Ssu5g0197 589 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Ssu5g0197 589 ProSiteProfiles B3 DNA-binding domain profile. 470 566 IPR003340 GO:0003677
Ssu5g0197 589 Gene3D - 224 339 IPR015300 -
Ssu5g0197 589 Gene3D - 455 565 IPR015300 -
Ssu5g0197 589 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 444 - -
Ssu5g0197 589 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 445 582 - -
Ssu5g0197 589 SUPERFAMILY DNA-binding pseudobarrel domain 237 338 IPR015300 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu5g0197 B3 4.7e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0197 5 4215606 4219635 Ssu5g0197 5 4215606 4219635 ECH