Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0196 atggGGGGTCAAAATTGCAATGGTTGCAGATCGTGGGAGGAGGACATTTACTGGTCCCATTTTCAATTCCTTCATTTCGTGCAATTTCTCCGTACCGATTATGATCGACACCTTGCACTTCCGAAAACATTTTCGGATAATTTAAAGAAGAAGTTGCCGGAAAATGTGTCCCTTAAAGGTCCTAGTGGCGTTGTGTGGAATATAGGGCTGACTACTAGAGATGATACCTTGTACTTCACGCATGGTTGGGAACAATTTGTGAAAGATCACCGTTTGAAAGAGAATGATTTCCTGGTCTTCAAGTACAATGGTGAATCTCAGTTTGATGTTTTACTATTTGATGGGGGGAGTTTCTGTGAGAAGGCAGGTTCTTACTTTGTTCGAAAATGTGGGCACACTGAACATGCGGGTGGAAGTCTCAACAAGAAAAGGGACACAGATAATTCTTTGGAGGAATGTAATACCCCTTCAAATGCTGGTGTGGAATGCGCTTCACCTGAGAAACCTGTGCATGTTAATGGTATGAAGGAGCCAATGGCTGTACATTCCGAAACTCGTGGTGAAAAGTCTTTCAACGCTGCTGTTGAATCTGCTGGTGCTGAGCAATTTACACCTGGTGGAGTCACTATGGTGGCAGCTGTTCCCCCTGAAACTAATAAAAGGGTCAGGAAGCTTGTATCTGCCGTTAAGCATGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTGTCTAATGTTCGTGAGAGAGCACTTAACTGGGTGTCTGGACTAGAAGCTTCACCTGTTTCTGCGGTTAAAAGTGGGACATATGAGGTGTATACCTCAAATAGAAGGCCTGTCACAGAAGACGAGACTAAAAATGTCTACGCGTTGGCCCAGGCAGCACGTACTGACGACAGTTTGGTCATAGTCATGCGACCCTCGCATGTGTACAAGAGATTCTTCGTGTCAATCCCTAATAAATGGATTGGAGACCATGTCTCTCCATCATCTCAAGATGTGATATTGCGCATGGGTAAGGGTGAATGGATTGCCAGATACAGCTACCATACTATTCGTCATACTGGAGGACTTAGTGGTGGGTGGAAACATTTTGCCCTTGATAATAACCTTGAAGAGTATGATGTCTGTGTGTTTAAACCAGCTGGCCAAATGAACAACACTTTGGTCATTGATGTGACCCTTTTTAGAGTTGTTGAGGAGATTGTTCCTCCCACTGCGATGTCTCCTGGAACTGGAAGAAGGGGTAGGAAGCCAGCAGTGAAGGCTATTCAGACAGAAACTTAG 1287 0.4476 MGGQNCNGCRSWEEDIYWSHFQFLHFVQFLRTDYDRHLALPKTFSDNLKKKLPENVSLKGPSGVVWNIGLTTRDDTLYFTHGWEQFVKDHRLKENDFLVFKYNGESQFDVLLFDGGSFCEKAGSYFVRKCGHTEHAGGSLNKKRDTDNSLEECNTPSNAGVECASPEKPVHVNGMKEPMAVHSETRGEKSFNAAVESAGAEQFTPGGVTMVAAVPPETNKRVRKLVSAVKHVQTKRRGRPAKVSNVRERALNWVSGLEASPVSAVKSGTYEVYTSNRRPVTEDETKNVYALAQAARTDDSLVIVMRPSHVYKRFFVSIPNKWIGDHVSPSSQDVILRMGKGEWIARYSYHTIRHTGGLSGGWKHFALDNNLEEYDVCVFKPAGQMNNTLVIDVTLFRVVEEIVPPTAMSPGTGRRGRKPAVKAIQTET 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0196 428 Gene3D - 19 119 IPR015300 -
Ssu5g0196 428 MobiDBLite consensus disorder prediction 136 157 - -
Ssu5g0196 428 CDD B3_DNA 300 397 IPR003340 GO:0003677
Ssu5g0196 428 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 247 408 IPR044837 -
Ssu5g0196 428 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 207 IPR044837 -
Ssu5g0196 428 Pfam B3 DNA binding domain 303 392 IPR003340 GO:0003677
Ssu5g0196 428 Pfam B3 DNA binding domain 37 112 IPR003340 GO:0003677
Ssu5g0196 428 MobiDBLite consensus disorder prediction 136 150 - -
Ssu5g0196 428 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Ssu5g0196 428 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Ssu5g0196 428 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 247 408 - -
Ssu5g0196 428 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 207 - -
Ssu5g0196 428 SMART B3_2 26 116 IPR003340 GO:0003677
Ssu5g0196 428 SMART B3_2 301 399 IPR003340 GO:0003677
Ssu5g0196 428 Gene3D - 280 401 IPR015300 -
Ssu5g0196 428 CDD B3_DNA 26 114 IPR003340 GO:0003677
Ssu5g0196 428 ProSiteProfiles B3 DNA-binding domain profile. 301 399 IPR003340 GO:0003677
Ssu5g0196 428 MobiDBLite consensus disorder prediction 407 428 - -
Ssu5g0196 428 SUPERFAMILY DNA-binding pseudobarrel domain 301 390 IPR015300 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu5g0196 B3 6.6e-12 CL0405