Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0195 ATGTTCACCAATTCACACACTGTAATGCAAACCTTATTATCACCTTTGTCGGAGCCAGACCTCTCCTTGAACATAAGCCCGCCCTCTATTTCAGACTCTGAAGCCAAAGAAGTGGTATGCTTTGGCAAAGTGCTTTACAACGACATGTGTTCAACTTCTGATTCGGGTAGTAGTGGTAGTGATTTGAGCCATGAGTTCCATAACCTTGGGCACCGTGAGCCCACATTGAAGTTAGGCTTTGGAACGGTGGGTTTGAATCCGCATCATCAAGTACAAGGAGTCCCGAGAGGCTTCAATCACCACCTCCAACCTCACATCTATGGCCGCGATTTCAAACGAAGTGCAAGAGTCGTTAATGGTGTAAAAAGAAGCGTAAGAGCTCCTAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTCCTTGGCGGTCATGAAAGAGCGACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACAGGTCATGGGCAGACAGATATTGGCTTGAACCCAAGGCCAGGGATTAATGTTCATCTGCATGCAGCCTCACCTTATTGTGACACACCCAATTTACCAGACCCGATTCAAAAATCCCACAGGACACCGTGGCAATCATCAATAGAGACAAATACAAACAAGAGTAGACAAGAACCCGAAATCGGTTTGACGTATTCTCACCTCAAGGGAAATGAAACCATGgTGGATGGGCACAATTATGGAGGCCTGTCAAATTGCATGAAGGAGAGGTTGGATTCTACCCCTTTGTCACGTTCCGAGGCAATGCTTGACCTTGAATTCACCCTAGGAAGGCCCAGTTGGCAAAAAGATCACGCCGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAA 957 0.4629 MFTNSHTVMQTLLSPLSEPDLSLNISPPSISDSEAKEVVCFGKVLYNDMCSTSDSGSSGSDLSHEFHNLGHREPTLKLGFGTVGLNPHHQVQGVPRGFNHHLQPHIYGRDFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGQTDIGLNPRPGINVHLHAASPYCDTPNLPDPIQKSHRTPWQSSIETNTNKSRQEPEIGLTYSHLKGNETMVDGHNYGGLSNCMKERLDSTPLSRSEAMLDLEFTLGRPSWQKDHAESSRELTLLKC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0195 318 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 318 - -
Ssu5g0195 318 Pfam Myb-like DNA-binding domain 129 180 IPR001005 -
Ssu5g0195 318 SUPERFAMILY Homeodomain-like 125 182 IPR009057 -
Ssu5g0195 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 128 181 IPR006447 GO:0003677
Ssu5g0195 318 MobiDBLite consensus disorder prediction 226 247 - -
Ssu5g0195 318 Gene3D - 127 184 - -
Ssu5g0195 318 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 318 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0195 Ssu-Chr5 4158734 4162232 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu5g0195 Myb_DNA-binding 1.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0195 5 4158734 4162232 Ssu5g0195 5 4158734 4162232 ECH
Ssu5g0195 5 4158734 4162232 Ssu1g3840 1 95658228 95661808 PCT