Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0194 ATGCTAAGAGACGAAAGCGTGGGTTCGATAAGCGCGAGGCACAgcgccaccgccaccaccgtCTCGAACAAGGTTCTGGTGGCCGTGAAGGCGGAGAAGGTGATCTCCAACACCGCATTAGCATGGGCACTCACTCATGTCGTTCACTCCAGCGACTCCATCACGCTTCTCGCCGTTTACTCTGCTCAAAAAACCGGCAGAAGGTTCTGGAACTTTTCGAGACTCGCCGGAGACTGTACGAACGGACCTGCGGGAAAGTTGCCGGAGCGAATTTCTGACATATCCGACTCTTGTGCTCAGATGGTGATTCAGTTGCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTCACGGGTACTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAaGAAATTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATAGTGGTGATGAATGGCTCACAGGCAAAAATCCTCAGGCTTAACTTAGGGTGTTCCGATGAACTCCAAACTCCTTTTTTCTCTGCTACTTCCTCACCAGGTGTAGAAATTGGAAAGCTAAAAGGCAGCAGATTGAAGCATTCTACCCCAGTTAGTAGCCCTGAAGAAGCAGGTACTTCTGTTACAAGAAACGTTGGAGTAAATTCAGTGTCAAGTTCTGACTCGACGACTTCTCTTTTCCTAGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGACCCAGAGAACAGAACACCCAAATCAATCAACGAACCAAAAGATTTCAACGTCCAGCCACCATTATACTTTGATCTTGAAGGGGATCGCCCTCTCCCTTCATGGACGCGTCCAACATCATCTGTGGCTAGTAATAACAAGACTATATTTTGGATTCCCCAAAACCACATTGTAGACGAGAAGTTTCAGAAAACTAGAAACAACAGTGCTATCCAAAGAACTAAATCTCCAACTTCGAAAACTTTACTTGAGAATTTTATACGTTGTGATCAAGAGATGAGGACAAATGAACTTGGGTTTGACAAAGCTCAAAGTAGAAGTTATGTTGCCGACTTGGGCATCAGAGATAATTCCATTCCTTTGGGCAGAACTACGTCTATACCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCTAAACGGTTTTCTTACAAAGAGCTAGAAGAAGCTACCGATATGTTCTCAGATGTGAATTTTTTAGCTGAAGGTGGATTTGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTTTGGTGGCTCTCAGGCAGATCTTGATTTCTGCAGGGAAGTTCGGCTTTTGAGTTGCGCACAACACAGAAATGTTGTACTGTTGATAGGATTTTGTATAGAGAGCAATTTGAGGATATTGGTCTACGAGTACATATGCAACGGATCCTTGGACCTCTACTTACATGGAGACGAGAGTATGCCTTTGGATTGGAACTCACGCTTAAAGATAGCAATTGGAGCTGCACGGGGCTTACGCTACCTTCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGGAATATAGATACTGAAGATCGCATTATAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGATGCTGGAAACCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGTTAATAACAGGTAGAAGAAGTAGTGAGTTGGAACAGTTCAATGTACACTATCTTTCTGAATGGTTTCACCCCCTACGCATGTTAGAACCCAATAATATCTTACAGAATGTTCTATCTCTCAAACCATGCTTCGATTCCGAGGAGTCATTGGAATTTAATCTTCAATTGCAAGCCATGGCACGAGCTGCTTCGTTGTGTCTACGTCTAGATCCGGATGCAAGACCCCCAATGTCAAAGATCCTGAGAGTGCTGGAAGGGGTTGATCCAGTTCGTCCTATGGGTTTAGACATCAATTCAGTTGGTAACACAAGTGGCCATTTAAGTGGTTTGAATTCGCACACTCCACCTAAAGGTACAATAAGTCATTCTCGTAGACTCTCACATTGA 2199 0.4375 MLRDESVGSISARHSATATTVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAQKTGRRFWNFSRLAGDCTNGPAGKLPERISDISDSCAQMVIQLHNQIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGVEIGKLKGSRLKHSTPVSSPEEAGTSVTRNVGVNSVSSSDSTTSLFLVYEQNPLYEGQDPENRTPKSINEPKDFNVQPPLYFDLEGDRPLPSWTRPTSSVASNNKTIFWIPQNHIVDEKFQKTRNNSAIQRTKSPTSKTLLENFIRCDQEMRTNELGFDKAQSRSYVADLGIRDNSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFGGSQADLDFCREVRLLSCAQHRNVVLLIGFCIESNLRILVYEYICNGSLDLYLHGDESMPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNIDTEDRIIGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITGRRSSELEQFNVHYLSEWFHPLRMLEPNNILQNVLSLKPCFDSEESLEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGVDPVRPMGLDINSVGNTSGHLSGLNSHTPPKGTISHSRRLSH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0194 732 MobiDBLite consensus disorder prediction 708 732 - -
Ssu5g0194 732 MobiDBLite consensus disorder prediction 201 231 - -
Ssu5g0194 732 ProSitePatterns Tyrosine protein kinases specific active-site signature. 532 544 IPR008266 GO:0004672|GO:0006468
Ssu5g0194 732 Gene3D Transferase(Phosphotransferase) domain 1 487 695 - -
Ssu5g0194 732 SMART tyrkin_6 411 688 IPR020635 GO:0004713|GO:0006468
Ssu5g0194 732 SUPERFAMILY Protein kinase-like (PK-like) 391 689 IPR011009 -
Ssu5g0194 732 ProSiteProfiles Protein kinase domain profile. 411 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0194 732 Gene3D Phosphorylase Kinase; domain 1 380 486 - -
Ssu5g0194 732 Pfam Protein tyrosine and serine/threonine kinase 417 648 IPR001245 GO:0004672|GO:0006468
Ssu5g0194 732 PANTHER OS01G0253100 PROTEIN 19 723 IPR045271 GO:0004714|GO:0006468
Ssu5g0194 732 MobiDBLite consensus disorder prediction 204 231 - -
Ssu5g0194 732 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 19 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0194 Ssu-Chr5 4123034 4129313 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Ssu5g0194 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0194 5 4123034 4129313 Ssu5g0194 5 4123034 4129313 ECH