Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0193 ATGTTTGGCGAACCTGCTCCACGTCCAGAGTTCATGCAATCGGAGCCGAGAATGTCGACGACGGAGGCCCTAACCGACGACGAGTTCACATTACGAAGCAGCAGCGCAGCCTCACCAATGAGCCCTTACTACTACGAGCAAGGAAGGTTAAGCGGCGAAAGCTCGCCCATGATGATGTCACCATGGAACCAAACCACCAATTCCCCCTTCTCCAAACCTCAGTGGTCCCAGCAAGAAGAAAACGTCCCGCCAAACGCGCTCGTAGGTTCCCTGGTCCGCGAAGAGGGACACATCTACTCCCTCGCCGCCTCCGGCGACCTCTTGTACACCGGTTCCGACAGCAAGAACATCCGCGTCTGGAAGAATCTCCAAGAATATTGCGGCTTCAAATCCAACAGCGGTTTGGTCAAAACCATAATAATCTCTGGCCAAAAAATCTTCACCGGCCACCAAGACGGTAAAATCCGTGTCTGGAAGGTCTCTCCCAAGAACCCCAGCGTGCACAAACGAGCCGGAACGTTACCAACGCTTAAAGATATCTTCAAGAGCTCAATTAAGCCCAGCAATTACGTCGAGGTTCGGCGACACAAAACGGCGTTGTGGATTAGACATTCGGACGCCGTTTCGTGTTTGAGTCTTTCAGACGACAAAACGTATTTATACTCTGCGTCGTGGGACAGGACAATTAAGGTGTGGAGGATTTCGGACTCCAAGTGTCTGGAGTCGATTCACGCGCACGACGACGCGGTGAACGCCGTGGTGTGCGGGGACGAGGGAGTGATGTTTTCCGGCTCGGCGGACGGGACGGTGAAGGTGTGGCGGAGGGAGGCGCGCGGGAAGGGGTTGAAGCACGCGGCGGTGAAGACTCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACGCGGCGGGGACAATGGTGTACTGCGGCGCCTCCGACGGGTTGGTGAATTTTTGGGAGCGCGGCAAGAATTACGCGCACGGCGGGGTCCTGAAGGGGCACAAGCTTGCGGTGCTGTGTCTTGGTTCGGCGGGGACGTTGGTGTTTAGTGGCTCTGCGGATAAGACGATATGCGTGTGGAAGAGGGAGGGCGTGATTCACACGTGCGTGTCGGTGCTGACGGGGCACGAGGGTCCGGTGAAGTGCCTCGCCGTCGAGGAGGACCGCGACGCCGCCGCGAGAGGGGACCGGCGCTGGGTTGTGTACAGTGGAAGTTTGGATAAGTCGGTTAAGGTGTGGAGCGTGTCCGAGAtggtgaataataataataataatctggTGCTGCACCACCGCAAGGCTTCTGATGCTGACTCCTTGCCTTCCGAATCCGATGGTAGTCTGTCTTCGGGCTGGGTCAGTAGGAAACACTGA 1377 0.5643 MFGEPAPRPEFMQSEPRMSTTEALTDDEFTLRSSSAASPMSPYYYEQGRLSGESSPMMMSPWNQTTNSPFSKPQWSQQEENVPPNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKTIIISGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSDDKTYLYSASWDRTIKVWRISDSKCLESIHAHDDAVNAVVCGDEGVMFSGSADGTVKVWRREARGKGLKHAAVKTLLKQECAVTALAVDAAGTMVYCGASDGLVNFWERGKNYAHGGVLKGHKLAVLCLGSAGTLVFSGSADKTICVWKREGVIHTCVSVLTGHEGPVKCLAVEEDRDAAARGDRRWVVYSGSLDKSVKVWSVSEMVNNNNNNLVLHHRKASDADSLPSESDGSLSSGWVSRKH 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0193 458 SUPERFAMILY WD40 repeat-like 82 419 IPR036322 GO:0005515
Ssu5g0193 458 SMART WD40_4 122 159 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 236 274 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 326 363 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 368 416 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 283 322 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 84 121 IPR001680 GO:0005515
Ssu5g0193 458 SMART WD40_4 194 233 IPR001680 GO:0005515
Ssu5g0193 458 Pfam WD domain, G-beta repeat 370 416 IPR001680 GO:0005515
Ssu5g0193 458 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Ssu5g0193 458 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Ssu5g0193 458 Pfam WD domain, G-beta repeat 331 363 IPR001680 GO:0005515
Ssu5g0193 458 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Ssu5g0193 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
Ssu5g0193 458 MobiDBLite consensus disorder prediction 14 39 - -
Ssu5g0193 458 CDD WD40 95 416 - -
Ssu5g0193 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Ssu5g0193 458 Gene3D - 194 329 IPR015943 GO:0005515
Ssu5g0193 458 Gene3D - 62 193 IPR015943 GO:0005515
Ssu5g0193 458 PANTHER PROTEIN JINGUBANG 10 444 - -
Ssu5g0193 458 MobiDBLite consensus disorder prediction 435 458 - -
Ssu5g0193 458 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Ssu5g0193 458 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Ssu5g0193 458 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Ssu5g0193 458 Gene3D - 330 457 IPR015943 GO:0005515
Ssu5g0193 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 238 - -
Ssu5g0193 458 MobiDBLite consensus disorder prediction 441 458 - -
Ssu5g0193 458 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g0193 458 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 444 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0193 Ssu-Chr5 4115689 4117627 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0193 5 4115689 4117627 Ssu5g0193 5 4115689 4117627 ECH
Ssu1g2801 1 74528628 74532674 Ssu5g0193 5 4115689 4117627 PCT