Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0189 ATGTTCTCCAACAACAACAGTGTATCGATCTCCGTCTCGGACGACGAATACGACGAGCTGGGTCGGATGCGGATCCGCGCCCGACGGAAGCGGAAAAAACTCGGGCACAGACGATTGCTGAGGAAGCTACTCGTCAAATACTGGATGCTACTCATCATTGTTCCAGCTTTGGGTTTGCTCCTATTCGAGGCCTCGAGAATTGGCCTAAGGCCCAGTTTAAACACGAACACCGACATAGAAACACGCAATAATCGAGTTGATAGATCTAGTCCCACATTGCAGAAGGAGCCTCCCGCCAACTTGAATCGCCTTGATCCTACAACCCGTCTTGTGGGCGGTGTCAGAGAACGTTGCTTGAAGCTCCTACCACCTGAAAAGCTTGAGCATCTGGATATTCCTGCAGAAGAAGACTCTTCTAGTTTTCCTGTTGGTGAAGTTTTATACATGTCAGAGAGTGATGAGTCTTTTGTAGGAGGGAATGTTACATTGTCTCAATTGCGTACAGAGGACACaaggtttaatttatttactggAAATCAAATGTTTGAGCAGAGAGATAAAAGTTTTGAGGTAAAAGAAACTATGATGGTACATTGTGGGTTCTACAGTGTGAATGGAGGGTTTAAGATATCCAATGAAGATAAAAGTTACATGCAAGGTTGCAAAGTTGTGGTATCTACTTGTGCATTTGGTGGTGGGGATGATCTCTATCAACCGATCGGAATGTCTGAGGCTTCGCTCAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACCCTAAAAGCGCAGGAGTTGGTGGAGCGAAGAATTGGGGAAAATGGGTTTATTGGAAAATGGCGTGTTATTGTAGTTCGGGATCTTCCTTTTGCTGATCAAAGGTTGAATGGTAAAATTCCCAAGATGTTAAGCCATCGCCTTTTTCCTCAAGCAAAATACTCAATTTGGGTAGACTCCAAGTCCCAATTCCGGAGAGACCCACTAGGGGTGTTGGAAGCTCTCCTTTGGTGCACAAATTCTATGCTTGCCATATCAGAACATGGAGCTCGCAGTAGTGTCTATGACGAGGCTAAGGCTGTTGTCAAGAAGAACAAAGCCAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCTTGCCTGAAGACAAGAGATTTAATGGAAAAAAAGCTCTATGTGAAGCCTCTGTTATCGTGAGGAAGCATACACCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACTTCTAGGGATCAGCTCAGCTTCCCATATGTCTTGTGGCGGCTGAAagcattcaaaaatataaatgcattCCCTGTCTGTACTCGCAAGGATCTTGTCAATAGTATGGGACATATCCGCAAGGCCAAACCTTTGAAAAGctga 1413 0.436 MFSNNNSVSISVSDDEYDELGRMRIRARRKRKKLGHRRLLRKLLVKYWMLLIIVPALGLLLFEASRIGLRPSLNTNTDIETRNNRVDRSSPTLQKEPPANLNRLDPTTRLVGGVRERCLKLLPPEKLEHLDIPAEEDSSSFPVGEVLYMSESDESFVGGNVTLSQLRTEDTRFNLFTGNQMFEQRDKSFEVKETMMVHCGFYSVNGGFKISNEDKSYMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVERRIGENGFIGKWRVIVVRDLPFADQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWCTNSMLAISEHGARSSVYDEAKAVVKKNKAKPEEVEVQLNQYRKDGLPEDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINAFPVCTRKDLVNSMGHIRKAKPLKS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0189 470 MobiDBLite consensus disorder prediction 73 97 - -
Ssu5g0189 470 PANTHER OS01G0749100 PROTEIN 2 468 - -
Ssu5g0189 470 Pfam Protein of unknown function (DUF616) 167 461 IPR006852 -
Ssu5g0189 470 MobiDBLite consensus disorder prediction 73 101 - -
Ssu5g0189 470 PANTHER ALKALINE CERAMIDASE-RELATED 2 468 IPR006852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0189 Ssu-Chr5 3806722 3809789 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0189 5 3806722 3809789 Ssu5g0189 5 3806722 3809789 ECH