Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0187 ATGGCTATAGACACTCCACTACTAGATAACAATGGCCACTCAACTAATGTTGAGGAGGAGAATCCACCGAACGTTGTTAAGAGATTCGGGTTTGAGTCGAAGAAGCTATGGAGAATAGCAGGCCCAGCTATCCTTACCTCTATATTTCAATACTCGCTTGGTGCACTCACTCAAACATTTGCTGGCTTTGTTGGTGAGATCGATCTTGCGGCAGTTTCCGTTGAAAACTCTGTTATTGCTGGCCTCGCCTTTGGAGTCATGTTGGGTATGGGGAGTGCCTTGGAGACTCTTTGTGGGCAAGCATATGGTGCGGGTCAGATCAGGATGCTGGGGGTGTACATGCAAAGATCATGGGTCATCTTATTAACTACAGCcgttattttggtccctatttaTGTTTGGTCATCTCCCATCTTGAAGCTCTTTGGAGAGACTACTGAGATCTCAGATGCTGCTGgaaaatttgCTCTGTGGATGATACCACAGTTGTTTGCATACGCTATGAACTTTCCAATCCAAAAGTTCTTACAGGCACAGAGGAAAGTCCTCGTGATGTTGTGGATATCAGTAGTTGTTTTGGTGATACACACATTTTTTAGTTGGCTTCTTATGTTCAAGCTGGGATGGGGCCTAACTGGAGCAGCAATTATGCTTAACACGTCATGGTGGTTGATTGTCATTGGGCAATTGTTGTACATTTTCATCACTAAGTCAGACGGAGCTTGGAGTGGATTTACATGGCTAGCATTTGCAGACTTGTTTGGTTTTGTAAAGCTTTCTTTGGCTTCAGCTGTTATGTTATGCTTGGAGTTTTGGTATTTGATGATAATAGTGGTGATAACAGGGCGCTTGAAAAATCCTCTGATACCTGTTGATGCCATATCTATCTGTTTGAACATAAATGGTTGGGATGCCATGATTGCGATTGGGTTCAATGCTGCTATAAGTGTAAGAGTTTCAAATGAACTTGGAGCTGGTGATTTCAAGGCTGCCAGATTTGCAGTGTGGGTGGTTTCCATCACATCAGTATCCATAGGTGTTGTCGTCATGATCGTAGTGCTGGCAACGAGGGATTACTTTCCCTACTTGTTTACCACGAGCGTTGCAGTTGCCAAGGAAACAACTAAGATTGCTACTTTGCTCGCTGTCACAGTACTTCTAAACAGTCTTCAACCGGTCCTATCTGGTGTTGCTGTTGGAGCTGGCTGGCAAGCTATAGTAGCATACATCAACGTTGGGTGCTACTATATTATTGGATTACCGGCAGGGATAATCTTGGGATTCACATTTGGTTTTGGAGTAGAGGGTATTTGGTCAGGGATGATTGGAGGCATAGTTTTGCAGACCATAATCCTTATAATCGTCACTTCATTAACCAACTGGGAAAAAGAGGCTGAACAAGCAGAGAACCGCGTGAAAAAGTGGGGAGGATCTATTGCGTATGAGCAATGA 1452 0.4318 MAIDTPLLDNNGHSTNVEEENPPNVVKRFGFESKKLWRIAGPAILTSIFQYSLGALTQTFAGFVGEIDLAAVSVENSVIAGLAFGVMLGMGSALETLCGQAYGAGQIRMLGVYMQRSWVILLTTAVILVPIYVWSSPILKLFGETTEISDAAGKFALWMIPQLFAYAMNFPIQKFLQAQRKVLVMLWISVVVLVIHTFFSWLLMFKLGWGLTGAAIMLNTSWWLIVIGQLLYIFITKSDGAWSGFTWLAFADLFGFVKLSLASAVMLCLEFWYLMIIVVITGRLKNPLIPVDAISICLNINGWDAMIAIGFNAAISVRVSNELGAGDFKAARFAVWVVSITSVSIGVVVMIVVLATRDYFPYLFTTSVAVAKETTKIATLLAVTVLLNSLQPVLSGVAVGAGWQAIVAYINVGCYYIIGLPAGIILGFTFGFGVEGIWSGMIGGIVLQTIILIIVTSLTNWEKEAEQAENRVKKWGGSIAYEQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0187 483 Pfam MatE 42 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0187 483 Pfam MatE 263 423 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0187 483 TIGRFAM matE: MATE efflux family protein 42 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g0187 483 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0187 483 PANTHER PROTEIN DETOXIFICATION 33 18 469 - -
Ssu5g0187 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 469 - -
Ssu5g0187 483 CDD MATE_eukaryotic 32 467 IPR045069 GO:0042910|GO:1990961
Ssu5g0187 483 Coils Coil 458 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0187 Ssu-Chr5 3790239 3795819 Dispersed/Tandem