Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0185 ATGCAGCGGAGAGAGCAACCCCAGTCTCCTTGCCTAACTGATGTGGAGCCAGACAGAATCAGTTGCTTACCGGGTCACGTAATAGACCAAATTCTGTCACATTTGTCAATTAGGGAAGCAGTGAGGACAAGTGTTTTATCTAGCAAATGGAGGTACAAATGGGCCACGCTACCGAATCTTGTGTTCGATAACCAATGTGTCTCTGTGGCTTCTCAGGACCATATGATTATCAAGAACAAGCTTTTGAGAATTATAGATCATGTACTGCTACTTCATTCTGGGCCAATCAACAAGTTCAAGCTTTCCCATCGCGACCTCATTGGTGTGACTGATATTGATCGTTGGACGCTTCATCTATTCAGGAACTCTATTAAAGAGTTTGTGCTGGAAATCTGGAAAGGGCAACGCTATAAGATACACTCGTGTTTGTTTTCTTGTCAAAGTCTGAatcatttagaattatttaattgttggCTTAAACCTCCATCAACATTTCAAGGATTCAGGAACTTGAAGAGTCTTGATCTGCAACATGTTACCTTGGCTCAAGATGTTTTTGAAAACTTGATATCCAGCTGCCCTCTGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTCACTCATCTTAATATTGATGCACCAAATCTCCTGTTTTTTGACATTGGAGGTAAATTTGAGGATATTAGCTTTGAGAACACTTTCCAGTTAGCTGTGGTATCCATTGGTTTgtatttgaactttgaaatCAATCAAAGTAGATTGCATGGAGGCTCTAGCAATTTGCTCAAATTTTTTGTTCATCTGCCTCACGTTCAAAGGCTAGAGGTTCAAAGCTATTTTTTAAAGTATTTGGCAGTGGGGGTTGTGCCAATAAAGCTTCCAAGACCATGCATTGACCTAAGTTATCTTTCCATACGAATAAACTTCAATGATTTGAAGGAAATCTCAGCTGCTCTTTGCCTCCTAAGAAGCTCGCCTAATCTACAAGAACTAGAAATATTGGCTCGACCTGAGGAGCAGACTGTTCTGTTAACACACACATATTGTTGGGAAGATGTCTATTTTACTTGTCCAGTCATGCAACTGCGATATGTGAAGATAGATTGCATCTCTGGTATCAAACCTGAATTAGATTTTATCAACTTTCTACTTCTATACTCTCCTGTGCTAGAAAGGATGACTGTGAAGCCTGTTTCTAACGCTGGATTAGAACTGATGAAAGAACTATTGCGGTTTAGGAGAGCCTCAGGACGAGCTGAAATTATTTACTTGGATCCTTCTTAA 1287 0.3916 MQRREQPQSPCLTDVEPDRISCLPGHVIDQILSHLSIREAVRTSVLSSKWRYKWATLPNLVFDNQCVSVASQDHMIIKNKLLRIIDHVLLLHSGPINKFKLSHRDLIGVTDIDRWTLHLFRNSIKEFVLEIWKGQRYKIHSCLFSCQSLNHLELFNCWLKPPSTFQGFRNLKSLDLQHVTLAQDVFENLISSCPLLERLTLMNFDGFTHLNIDAPNLLFFDIGGKFEDISFENTFQLAVVSIGLYLNFEINQSRLHGGSSNLLKFFVHLPHVQRLEVQSYFLKYLAVGVVPIKLPRPCIDLSYLSIRINFNDLKEISAALCLLRSSPNLQELEILARPEEQTVLLTHTYCWEDVYFTCPVMQLRYVKIDCISGIKPELDFINFLLLYSPVLERMTVKPVSNAGLELMKELLRFRRASGRAEIIYLDPS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0185 428 ProSiteProfiles F-box domain profile. 17 51 IPR001810 GO:0005515
Ssu5g0185 428 Pfam Leucine Rich Repeat 170 194 IPR013101 -
Ssu5g0185 428 Pfam F-box domain 20 52 IPR001810 GO:0005515
Ssu5g0185 428 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 14 394 - -
Ssu5g0185 428 SUPERFAMILY F-box domain 17 62 IPR036047 GO:0005515
Ssu5g0185 428 SUPERFAMILY RNI-like 122 334 - -
Ssu5g0185 428 PANTHER F-BOX PROTEIN-LIKE 14 394 - -
Ssu5g0185 428 Gene3D Ribonuclease Inhibitor 116 374 IPR032675 -
Ssu5g0185 428 SMART 9598neu4hmm 357 425 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0185 Ssu-Chr5 3679396 3681122 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0185 5 3679396 3681122 Ssu5g0185 5 3679396 3681122 ECH